Hierarchy For All Packages

Package Hierarchies:

com.rubecula.darwin.domain.environment, com.rubecula.darwin.domain.fitness, com.rubecula.darwin.domain.genetics, com.rubecula.darwin.domain.helper, com.rubecula.darwin.domain.world, com.rubecula.darwin.evolution, com.rubecula.darwin.examples.pepperedmoth, com.rubecula.darwin.examples.travelingsalesman, com.rubecula.darwin.foundation, com.rubecula.darwin.startup, com.rubecula.darwin.visualization, com.rubecula.darwin.visualization.swing, com.rubecula.util, com.rubecula.util.random

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.AbstractSequentialList<E>
        • com.rubecula.darwin.examples.travelingsalesman.CircularLinkedList<E> (implements java.lang.Cloneable, java.util.Deque<E>, java.io.Serializable)
          • com.rubecula.darwin.examples.travelingsalesman.Route
  • com.rubecula.darwin.examples.pepperedmoth.Allele_PepperedMoth
  • com.rubecula.darwin.domain.genetics.AlleleFactory
  • com.rubecula.darwin.examples.pepperedmoth.ApplicationDefinitions_
    • com.rubecula.darwin.examples.pepperedmoth.ApplicationDefinitions
  • net.sf.tostring0.AToString (implements net.sf.tostring0.IToString)
    • com.rubecula.darwin.domain.helper.Attribute_ (implements com.rubecula.darwin.domain.helper.Attribute, net.sf.tostring0.Identifiable)
      • com.rubecula.darwin.domain.genetics.Allele_ (implements com.rubecula.darwin.domain.helper.Allele)
        • com.rubecula.darwin.domain.genetics.Allele_Binary (implements com.rubecula.darwin.domain.helper.EitherOr)
          • com.rubecula.darwin.domain.genetics.Allele_Dominance (implements com.rubecula.darwin.domain.genetics.Dominance)
          • com.rubecula.darwin.domain.genetics.Allele_Sex (implements com.rubecula.darwin.domain.helper.Sexual)
        • com.rubecula.darwin.examples.travelingsalesman.Allele_Number
      • com.rubecula.darwin.domain.helper.Attribute_Standard
      • com.rubecula.darwin.domain.environment.EcoFactor_ (implements java.lang.Cloneable, com.rubecula.darwin.domain.helper.EcoFactor)
        • com.rubecula.darwin.domain.environment.EcoFactor_Number (implements com.rubecula.darwin.domain.helper.Quantifiable)
          • com.rubecula.darwin.domain.environment.EcoFactor_Humboldtian
          • com.rubecula.darwin.examples.pepperedmoth.EcoFactor_SootDensity
        • com.rubecula.darwin.examples.travelingsalesman.EcoFactor_TS
          • com.rubecula.darwin.examples.travelingsalesman.EcoFactor_Clients
          • com.rubecula.darwin.examples.travelingsalesman.EcoFactor_TravelTimes
      • com.rubecula.darwin.domain.environment.Variant_ (implements com.rubecula.darwin.domain.helper.Variant)
        • com.rubecula.darwin.domain.environment.Trait_VisitingSequence
        • com.rubecula.darwin.domain.environment.Variant_Basic
          • com.rubecula.darwin.domain.environment.Variant_Numeric (implements com.rubecula.darwin.domain.helper.Quantifiable)
        • com.rubecula.darwin.examples.pepperedmoth.Variant_WingColor
    • com.rubecula.darwin.foundation.AuditableList<E> (implements net.sf.tostring0.Identifiable, java.util.List<E>)
      • com.rubecula.darwin.domain.genetics.Genotype_ (implements java.lang.Cloneable, com.rubecula.darwin.domain.helper.Genotype)
        • com.rubecula.darwin.domain.genetics.Genome_ (implements com.rubecula.darwin.domain.helper.Genome)
          • com.rubecula.darwin.domain.genetics.Genome_Linear
    • com.rubecula.darwin.visualization.Avatar_ (implements com.rubecula.darwin.visualization.Avatar)
      • com.rubecula.darwin.visualization.Avatar_ColorLocation
      • com.rubecula.darwin.visualization.Avatar_Variable
    • com.rubecula.darwin.foundation.Best_<T> (implements com.rubecula.darwin.foundation.Best<T>, com.rubecula.darwin.foundation.Valuable)
      • com.rubecula.darwin.domain.world.Best_Organism
    • com.rubecula.darwin.domain.genetics.Chromosome_ (implements com.rubecula.darwin.domain.helper.Chromosome)
      • com.rubecula.darwin.domain.genetics.Chromosome_NoSex
      • com.rubecula.darwin.domain.genetics.Chromosome_Sex
    • com.rubecula.darwin.domain.world.Colony_ (implements com.rubecula.darwin.domain.helper.Colony, com.rubecula.darwin.domain.helper.EnvironmentListener)
      • com.rubecula.darwin.domain.world.Colony_Mayrian
    • com.rubecula.darwin.domain.environment.EcoSystem (implements java.lang.Cloneable, com.rubecula.darwin.foundation.Countable)
    • com.rubecula.darwin.domain.environment.Environment_ (implements com.rubecula.darwin.domain.helper.Environment)
      • com.rubecula.darwin.domain.world.Environment_Muirian
      • com.rubecula.darwin.examples.pepperedmoth.Environment_PepperedMoth
      • com.rubecula.darwin.domain.environment.Environment_Susceptible (implements com.rubecula.darwin.domain.environment.Susceptible)
        • com.rubecula.darwin.examples.travelingsalesman.Environment_TS (implements com.rubecula.darwin.examples.travelingsalesman.TakesTravelTime)
    • com.rubecula.darwin.foundation.Evolvable_ (implements com.rubecula.darwin.foundation.Evolvable)
      • com.rubecula.darwin.domain.world.Population_ (implements com.rubecula.darwin.domain.helper.Population, com.rubecula.darwin.foundation.Visualizable)
        • com.rubecula.darwin.domain.world.Population_Malthusian
        • com.rubecula.darwin.domain.world.Population_Managed (implements com.rubecula.darwin.domain.world.Managed)
          • com.rubecula.darwin.examples.travelingsalesman.Population_TS
      • com.rubecula.darwin.domain.world.Taxon_ (implements com.rubecula.darwin.domain.helper.Taxon)
        • com.rubecula.darwin.domain.world.Taxon_Darwinian
    • com.rubecula.darwin.evolution.Evolver_ (implements com.rubecula.beanpot.Configurable, com.rubecula.darwin.evolution.Evolver)
      • com.rubecula.darwin.evolution.Evolution_ (implements com.rubecula.darwin.evolution.Evolution)
        • com.rubecula.darwin.evolution.Evolution_Timed (implements com.rubecula.darwin.evolution.Timed)
          • com.rubecula.darwin.evolution.Evolution_Calendar (implements com.rubecula.darwin.evolution.CalendarEvolution)
          • com.rubecula.darwin.evolution.Evolution_Standard
    • com.rubecula.darwin.domain.environment.ExPhen_ (implements com.rubecula.darwin.domain.helper.ExPhen)
      • com.rubecula.darwin.domain.environment.ExPhen_Castor
      • com.rubecula.darwin.examples.travelingsalesman.ExPhen_TS
    • com.rubecula.darwin.domain.genetics.Gene_ (implements java.lang.Cloneable, com.rubecula.darwin.domain.helper.Gene, net.sf.tostring0.Identifiable)
      • com.rubecula.darwin.domain.genetics.Gene_Diploid
      • com.rubecula.darwin.domain.genetics.Gene_Haploid
    • com.rubecula.darwin.domain.genetics.Genomic_ (implements com.rubecula.darwin.domain.helper.Genomic)
      • com.rubecula.darwin.domain.genetics.Genomic_Diploid
        • com.rubecula.darwin.domain.world.Genomic_Sexual (implements com.rubecula.darwin.domain.genetics.HasSexChromosome)
      • com.rubecula.darwin.domain.genetics.Genomic_Haploid
        • com.rubecula.darwin.domain.world.Genomic_Asexual (implements com.rubecula.darwin.domain.helper.Chromosome)
    • com.rubecula.darwin.domain.genetics.Locus_ (implements com.rubecula.darwin.domain.helper.Locus, com.rubecula.darwin.domain.helper.SexLinked)
      • com.rubecula.darwin.domain.genetics.Locus_Random
        • com.rubecula.darwin.domain.genetics.Locus_Sex
        • com.rubecula.darwin.domain.genetics.Locus_Triversian
        • com.rubecula.darwin.examples.travelingsalesman.Locus_TS
    • com.rubecula.darwin.domain.world.Mate
    • com.rubecula.darwin.domain.genetics.Mating_ (implements com.rubecula.darwin.domain.helper.Mating)
      • com.rubecula.darwin.domain.genetics.Mating_Haldanian
    • com.rubecula.darwin.domain.genetics.Meiosis_ (implements com.rubecula.darwin.domain.helper.Meiosis)
      • com.rubecula.darwin.domain.genetics.Meiosis_Chromosome
      • com.rubecula.darwin.domain.genetics.Meiosis_Clone
      • com.rubecula.darwin.domain.genetics.Meiosis_Locus
    • com.rubecula.darwin.domain.genetics.Mortality_ (implements com.rubecula.darwin.domain.helper.Mortality)
      • com.rubecula.darwin.domain.genetics.Mortality_Reaper
      • com.rubecula.darwin.examples.travelingsalesman.Mortality_TS
    • com.rubecula.darwin.domain.genetics.Mutator_ (implements com.rubecula.darwin.domain.helper.Mutator)
      • com.rubecula.darwin.domain.genetics.Mutator_Null
      • com.rubecula.darwin.domain.genetics.Mutator_Random (implements com.rubecula.darwin.domain.genetics.Chancy)
        • com.rubecula.darwin.examples.pepperedmoth.Mutator_PepperedMoth
        • com.rubecula.darwin.examples.travelingsalesman.Mutator_TS
    • com.rubecula.darwin.domain.genetics.Nuclear_ (implements java.lang.Cloneable, com.rubecula.darwin.domain.helper.Nuclear)
      • com.rubecula.darwin.domain.genetics.Nuclear_Clone
      • com.rubecula.darwin.domain.genetics.Nuclear_Zygote (implements com.rubecula.darwin.domain.helper.Sexual)
    • com.rubecula.darwin.domain.world.Organism_ (implements java.lang.Cloneable, com.rubecula.darwin.domain.helper.Organism)
      • com.rubecula.darwin.domain.world.Organism_Asexual (implements com.rubecula.darwin.domain.world.Asexual)
        • com.rubecula.darwin.examples.travelingsalesman.Organism_TS
      • com.rubecula.darwin.domain.world.Organism_Sexual (implements com.rubecula.darwin.domain.helper.Sexual)
    • com.rubecula.darwin.domain.environment.Pharacter_ (implements com.rubecula.darwin.domain.helper.Pharacter)
      • com.rubecula.darwin.domain.environment.Pharacter_Fisherian
      • com.rubecula.darwin.domain.environment.Pharacter_Sex
    • com.rubecula.darwin.domain.environment.Phenome_ (implements com.rubecula.darwin.domain.helper.Phenome)
      • com.rubecula.darwin.domain.environment.Phenome_Gouldian
      • com.rubecula.darwin.domain.environment.Phenome_Numerical (implements com.rubecula.darwin.domain.environment.NumericalTrait)
    • com.rubecula.darwin.domain.environment.Trait_ (implements com.rubecula.darwin.domain.helper.Trait)
      • com.rubecula.darwin.domain.environment.Trait_Discrete
      • com.rubecula.darwin.domain.environment.Trait_Variable (implements com.rubecula.darwin.domain.helper.Quantifiable)
    • com.rubecula.darwin.domain.environment.TraitMap_ (implements com.rubecula.darwin.domain.helper.TraitMap)
      • com.rubecula.darwin.domain.environment.Phenotype_ (implements com.rubecula.darwin.domain.helper.Phenotype)
        • com.rubecula.darwin.domain.environment.Phenotype_Dawkinsian
        • com.rubecula.darwin.examples.travelingsalesman.Phenotype_TS
      • com.rubecula.darwin.domain.environment.TraitMap_ReadOnly
    • com.rubecula.darwin.examples.travelingsalesman.TravelTimes_Map (implements com.rubecula.darwin.examples.travelingsalesman.TravelTimes)
    • com.rubecula.darwin.visualization.VisualizationModel_ (implements com.rubecula.darwin.visualization.VisualizationModel)
      • com.rubecula.darwin.visualization.VisualizationModel_Standard
  • com.rubecula.darwin.domain.world.Attraction_ (implements com.rubecula.darwin.domain.world.Attraction)
    • com.rubecula.darwin.domain.world.Attraction_Uniform
  • com.rubecula.darwin.visualization.AvatarFactory
  • com.rubecula.util.BeanContainer
  • com.rubecula.darwin.domain.helper.Cache_<K,V> (implements com.rubecula.darwin.domain.helper.Cache, net.sf.tostring0.Identifiable)
    • com.rubecula.darwin.domain.helper.FitnessCache
    • com.rubecula.darwin.domain.helper.PhenotypeCache
  • com.rubecula.darwin.domain.helper.Census_ (implements com.rubecula.darwin.domain.helper.Census)
    • com.rubecula.darwin.domain.helper.Census_Log
  • java.lang.ClassLoader
    • com.rubecula.darwin.startup.Darwin.DarwinClassLoader
  • com.rubecula.darwin.examples.travelingsalesman.Client (implements java.lang.Comparable<T>, com.rubecula.darwin.domain.environment.EnvironmentNode, net.sf.tostring0.Identifiable, com.rubecula.darwin.foundation.Nameable)
  • com.rubecula.darwin.examples.travelingsalesman.ClientMap
  • com.rubecula.darwin.evolution.ClockWatcher_ (implements com.rubecula.darwin.evolution.ClockWatcher)
    • com.rubecula.darwin.evolution.ClockWatcher_Default
  • java.awt.Color (implements java.awt.Paint, java.io.Serializable)
    • com.rubecula.darwin.examples.pepperedmoth.SootColor
  • com.rubecula.darwin.foundation.ComparableValue_ (implements com.rubecula.darwin.foundation.ComparableValue)
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JButton (implements javax.accessibility.Accessible)
            • com.rubecula.darwin.visualization.swing.ActionButton (implements java.awt.event.ActionListener)
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • com.rubecula.darwin.visualization.swing.ControlPanel_ (implements com.rubecula.darwin.visualization.swing.ControlPanel)
            • com.rubecula.darwin.visualization.swing.ControlPanel_Default
            • com.rubecula.darwin.examples.pepperedmoth.ControlPanel_PepperedMoth
            • com.rubecula.darwin.examples.travelingsalesman.ControlPanel_TS
          • com.rubecula.darwin.visualization.swing.LabeledComponent
          • com.rubecula.darwin.visualization.swing.OptionsPanel_ (implements com.rubecula.darwin.visualization.swing.OptionsPanel)
            • com.rubecula.darwin.visualization.swing.OptionsPanel_Default
            • com.rubecula.darwin.visualization.swing.OptionsPanel_Standard
            • com.rubecula.darwin.examples.travelingsalesman.OptionsPanel_TS
          • com.rubecula.darwin.visualization.swing.Title
          • com.rubecula.darwin.visualization.swing.Visualizer_ (implements com.rubecula.darwin.visualization.Visualizer)
            • com.rubecula.darwin.visualization.swing.Visualizer_Standard
        • javax.swing.JSlider (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • com.rubecula.darwin.visualization.swing.PropertySlider_Exponential (implements javax.swing.event.ChangeListener)
          • com.rubecula.darwin.visualization.swing.PropertySlider_Normal (implements javax.swing.event.ChangeListener)
        • javax.swing.JTabbedPane (implements javax.accessibility.Accessible, java.io.Serializable, javax.swing.SwingConstants)
          • com.rubecula.darwin.visualization.swing.VisualizerTabs
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JTextField (implements javax.swing.SwingConstants)
            • com.rubecula.darwin.visualization.swing.TextField
      • java.awt.Panel (implements javax.accessibility.Accessible)
        • java.applet.Applet
          • javax.swing.JApplet (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
            • com.rubecula.darwin.visualization.swing.EvolutionaryApplet (implements com.rubecula.darwin.visualization.ControlAction, com.rubecula.darwin.evolution.Evolutionary, com.rubecula.darwin.domain.helper.GenerationListener)
              • com.rubecula.darwin.visualization.swing.VisualizingEvolutionaryApplet (implements com.rubecula.darwin.visualization.swing.Interacter)
                • com.rubecula.darwin.examples.pepperedmoth.Applet_PepperedMoth
  • com.rubecula.darwin.startup.Darwin
    • com.rubecula.darwin.examples.travelingsalesman.TravelingSalesman
  • com.rubecula.darwin.domain.environment.EnvironmentChangeEvent (implements java.lang.Runnable)
  • com.rubecula.darwin.domain.environment.EnvironmentListener_ (implements com.rubecula.darwin.domain.helper.EnvironmentListener)
    • com.rubecula.darwin.visualization.EnvironmentListener_Visualization
      • com.rubecula.darwin.examples.pepperedmoth.EnvironmentListener_PepperedMoth
    • com.rubecula.darwin.domain.environment.EnvironmentListener_Writer
  • com.rubecula.darwin.evolution.EvolutionTask (implements com.rubecula.darwin.foundation.Clocked, java.lang.Runnable)
  • com.rubecula.darwin.domain.environment.ExPhenFactory
  • com.rubecula.darwin.domain.environment.Expresser_ (implements com.rubecula.darwin.domain.helper.Expresser)
    • com.rubecula.darwin.domain.environment.Expresser_Direct
    • com.rubecula.darwin.domain.environment.Expresser_Function
    • com.rubecula.darwin.domain.world.Expresser_Mendelian
      • com.rubecula.darwin.domain.world.Expresser_Sex
    • com.rubecula.darwin.examples.travelingsalesman.Expresser_TS
  • com.rubecula.darwin.foundation.ExpressionMap
  • com.rubecula.darwin.domain.genetics.Fecundity_ (implements com.rubecula.darwin.domain.helper.Fecundity)
    • com.rubecula.darwin.domain.genetics.Fecundity_Saturated
  • com.rubecula.darwin.domain.fitness.Fitness_ (implements com.rubecula.jexpression.EvalExpression, com.rubecula.darwin.domain.helper.Fitness)
    • com.rubecula.darwin.domain.fitness.Fitness_Hamiltonian
    • com.rubecula.darwin.examples.travelingsalesman.RouteFitness (implements com.rubecula.darwin.foundation.HasExpressions)
    • com.rubecula.darwin.examples.pepperedmoth.WcSdFitness (implements com.rubecula.darwin.foundation.HasExpressions)
  • com.rubecula.darwin.domain.helper.FitnessCacheKey (implements net.sf.tostring0.Identifiable)
  • com.rubecula.darwin.domain.fitness.FitnessEngine_ (implements com.rubecula.darwin.domain.helper.FitnessEngine, com.rubecula.darwin.foundation.FunctionListener)
    • com.rubecula.darwin.examples.pepperedmoth.FitnessEngine_PepperedMoth
    • com.rubecula.darwin.domain.fitness.FitnessEngine_Simple
    • com.rubecula.darwin.examples.travelingsalesman.FitnessEngine_TS
  • com.rubecula.darwin.domain.fitness.FitnessFunction_Math (implements com.rubecula.darwin.domain.helper.FitnessFunction)
  • com.rubecula.darwin.visualization.swing.FlipFlopButtons (implements java.awt.event.ActionListener)
  • com.rubecula.darwin.domain.world.Frequency (implements java.lang.Comparable<T>)
  • com.rubecula.darwin.domain.world.FrequencyMap<T>
    • com.rubecula.darwin.domain.world.NumericFrequencyMap (implements com.rubecula.darwin.domain.world.HasMean)
    • com.rubecula.darwin.domain.world.QuantifiableFrequencyMap (implements com.rubecula.darwin.domain.world.HasMean)
    • com.rubecula.darwin.domain.world.TraitFrequencyMap (implements com.rubecula.darwin.domain.world.HasMean)
  • com.rubecula.darwin.foundation.Function_ (implements com.rubecula.jexpression.EvalExpressionMutable, com.rubecula.darwin.foundation.Function)
    • com.rubecula.darwin.domain.fitness.FitnessFunction_ (implements com.rubecula.darwin.domain.helper.FitnessFunction)
      • com.rubecula.darwin.domain.fitness.FitnessFunction_Normal
      • com.rubecula.darwin.domain.fitness.FitnessFunction_PseudoPoisson
      • com.rubecula.darwin.domain.fitness.FitnessFunction_ScaledNormal
    • com.rubecula.darwin.domain.world.Function_Choosy (implements com.rubecula.darwin.domain.genetics.Choosy, com.rubecula.darwin.foundation.HasExpressions)
    • com.rubecula.darwin.domain.world.Function_Desirable (implements com.rubecula.darwin.domain.genetics.Desirable, com.rubecula.darwin.foundation.HasExpressions)
  • com.rubecula.darwin.domain.genetics.GeneFactory
  • com.rubecula.darwin.domain.helper.GenerationListener_ (implements com.rubecula.darwin.domain.helper.GenerationListener)
    • com.rubecula.darwin.domain.helper.GenerationListener_Standard
  • com.rubecula.darwin.domain.genetics.GenomeFactory
  • org.apache.commons.logging.LogFactory
    • org.apache.commons.logging.impl.LogFactoryImpl
      • com.rubecula.darwin.domain.helper.LogFactoryNoOp
  • com.rubecula.darwin.domain.world.MateChoice_ (implements com.rubecula.darwin.domain.helper.MateChoice)
    • com.rubecula.darwin.domain.world.MateChoice_Evaluator (implements com.rubecula.darwin.foundation.HasExpressions)
      • com.rubecula.darwin.examples.pepperedmoth.MateChoice_PepperedMoth
    • com.rubecula.darwin.domain.world.MateChoice_Wrightian
  • com.rubecula.util.Math
  • com.rubecula.darwin.domain.genetics.MatingFactory
  • com.rubecula.darwin.domain.genetics.Messages
  • com.rubecula.darwin.domain.world.Messages
  • com.rubecula.darwin.examples.pepperedmoth.Messages
  • com.rubecula.darwin.examples.travelingsalesman.Messages
  • com.rubecula.darwin.visualization.Messages
  • com.rubecula.darwin.visualization.swing.Messages
  • com.rubecula.darwin.domain.world.MortalityStats
  • com.rubecula.darwin.foundation.MutableValuable (implements com.rubecula.darwin.foundation.Valuable)
  • com.rubecula.darwin.domain.genetics.NuclearFactory
  • com.rubecula.darwin.visualization.swing.OptionsController_ (implements com.rubecula.darwin.visualization.ControlAction)
    • com.rubecula.darwin.examples.pepperedmoth.OptionsController_PepperedMoth
  • com.rubecula.darwin.domain.world.OrganismCensusContext
  • com.rubecula.darwin.domain.world.OrganismFactory
  • com.rubecula.darwin.visualization.Painter_ (implements com.rubecula.darwin.visualization.Painter)
    • com.rubecula.darwin.visualization.Painter_ColoredCircle
    • com.rubecula.darwin.examples.pepperedmoth.Painter_PepperedMoth
  • com.rubecula.darwin.examples.travelingsalesman.Painter_TS (implements com.rubecula.darwin.visualization.Painter)
  • com.rubecula.darwin.examples.pepperedmoth.PepperedMoth
  • com.rubecula.darwin.domain.helper.PhenotypeCacheKey (implements net.sf.tostring0.Identifiable)
  • com.rubecula.darwin.domain.environment.PhenotypeFactory
  • com.rubecula.darwin.domain.world.Population_Managed.ProcessBestInEnvironment (implements com.rubecula.darwin.foundation.ProcessBest<T>)
  • java.util.Random (implements java.io.Serializable)
    • org.apache.commons.math.random.RandomAdaptor (implements org.apache.commons.math.random.RandomGenerator)
      • com.rubecula.util.random.Random_Standard
    • com.rubecula.util.random.RandomLogged (implements com.rubecula.util.random.Peekable, org.apache.commons.math.random.RandomGenerator)
  • com.rubecula.util.RandomIterable<E> (implements java.lang.Iterable<T>)
    • com.rubecula.darwin.domain.world.Lek
  • com.rubecula.util.random.Randomizer (implements org.apache.commons.math.random.RandomGenerator)
    • com.rubecula.darwin.examples.travelingsalesman.Randomizer_TS
  • com.rubecula.darwin.domain.helper.Realm_ (implements com.rubecula.darwin.domain.helper.Realm)
    • com.rubecula.darwin.domain.world.Realm_Wallacian
  • com.rubecula.darwin.domain.world.Registry_ (implements com.rubecula.darwin.domain.helper.Registry)
    • com.rubecula.darwin.domain.world.Registry_None
    • com.rubecula.darwin.examples.pepperedmoth.Registry_PepperedMoth
    • com.rubecula.darwin.examples.travelingsalesman.Registry_TS
  • com.rubecula.darwin.domain.helper.Sink_ (implements com.rubecula.darwin.domain.helper.Sink)
    • com.rubecula.darwin.domain.helper.Census_Sink (implements com.rubecula.darwin.domain.helper.SinkCensus)
      • com.rubecula.darwin.domain.world.Census_Darwinian
        • com.rubecula.darwin.domain.world.Census_Detail
        • com.rubecula.darwin.examples.travelingsalesman.Census_TS
        • com.rubecula.darwin.examples.pepperedmoth.Census_WingColor
      • com.rubecula.darwin.domain.helper.Census_Standard
    • com.rubecula.darwin.domain.helper.Sink_Bucket
    • com.rubecula.darwin.domain.helper.Sink_Log
  • com.rubecula.util.StringUtilities
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • com.rubecula.darwin.evolution.EvolutionException
      • com.rubecula.darwin.domain.fitness.FitnessException
      • com.rubecula.darwin.foundation.FunctionException
      • com.rubecula.darwin.domain.helper.GeneticsException
      • java.lang.RuntimeException
        • com.rubecula.darwin.domain.helper.DarwinException
      • com.rubecula.darwin.foundation.ValueException
      • com.rubecula.darwin.visualization.VisualizationException
  • com.rubecula.darwin.domain.environment.TraitFactory
  • com.rubecula.darwin.examples.travelingsalesman.TravelingSalesmanOld
  • com.rubecula.darwin.domain.world.Viability_ (implements com.rubecula.darwin.domain.world.Viability)
  • com.rubecula.darwin.foundation.VisualizableListener_ (implements com.rubecula.darwin.foundation.VisualizableListener)
    • com.rubecula.darwin.domain.world.VisualizableListener_Census
  • com.rubecula.darwin.visualization.swing.Visualization_ (implements com.rubecula.darwin.visualization.swing.Visualization)
    • com.rubecula.darwin.visualization.swing.Visualization_VisualizableListener (implements com.rubecula.darwin.foundation.VisualizableListener)
      • com.rubecula.darwin.examples.pepperedmoth.Visualization_PepperedMoth
      • com.rubecula.darwin.examples.travelingsalesman.Visualization_TS
  • com.rubecula.darwin.examples.pepperedmoth.VisualizationFactory_PepperedMoth (implements com.rubecula.darwin.visualization.VisualizationFactory)
  • com.rubecula.darwin.examples.travelingsalesman.VisualizationFactory_TS (implements com.rubecula.darwin.visualization.VisualizationFactory)

Interface Hierarchy

• java.lang.Appendable
  • com.rubecula.darwin.domain.helper.Sink (also extends java.io.Closeable, java.io.Flushable)
    • com.rubecula.darwin.domain.helper.SinkCensus (also extends com.rubecula.darwin.domain.helper.Census)
  • com.rubecula.darwin.domain.helper.SinkCensus (also extends com.rubecula.darwin.domain.helper.Census, com.rubecula.darwin.domain.helper.Sink)
• com.rubecula.darwin.domain.world.Attraction
• com.rubecula.darwin.domain.helper.Attribute
  • com.rubecula.darwin.domain.helper.Allele (also extends com.rubecula.darwin.domain.helper.Basic, com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
  • com.rubecula.darwin.domain.helper.EcoFactor (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Individual)
  • com.rubecula.darwin.domain.helper.Variant (also extends net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
• com.rubecula.darwin.visualization.Avatar
• com.rubecula.darwin.domain.helper.Beans
• com.rubecula.darwin.domain.helper.Cache_MBean
  • com.rubecula.darwin.domain.helper.Cache
• com.rubecula.darwin.domain.helper.CacheSignature
  • com.rubecula.darwin.domain.helper.Allele (also extends com.rubecula.darwin.domain.helper.Attribute, com.rubecula.darwin.domain.helper.Basic, com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
  • com.rubecula.darwin.domain.helper.Basic
    • com.rubecula.darwin.domain.helper.Allele (also extends com.rubecula.darwin.domain.helper.Attribute, com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
    • com.rubecula.darwin.domain.helper.Gene (also extends com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
    • com.rubecula.darwin.domain.helper.Genes (also extends java.util.List<E>)
      • com.rubecula.darwin.domain.helper.Genome
      • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
        • com.rubecula.darwin.domain.helper.Genome
    • com.rubecula.darwin.domain.helper.Genome
    • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Genes, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
      • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Environment (also extends java.lang.Cloneable, com.rubecula.darwin.foundation.Visualizable)
  • com.rubecula.darwin.domain.helper.FitnessEngine (also extends com.rubecula.darwin.foundation.HasExpressions)
  • com.rubecula.darwin.domain.helper.Gene (also extends com.rubecula.darwin.domain.helper.Basic, com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
  • com.rubecula.darwin.domain.helper.Genes (also extends com.rubecula.darwin.domain.helper.Basic, java.util.List<E>)
    • com.rubecula.darwin.domain.helper.Genome
    • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
      • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Genes, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
    • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Phenotype (also extends com.rubecula.darwin.domain.helper.Fit, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.TraitMap)
  • com.rubecula.darwin.domain.helper.TraitMap (also extends com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable)
    • com.rubecula.darwin.domain.helper.Phenotype (also extends com.rubecula.darwin.domain.helper.Fit, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
• com.rubecula.darwin.evolution.CalendarEvolution
• com.rubecula.darwin.domain.helper.Census
  • com.rubecula.darwin.domain.helper.SinkCensus (also extends com.rubecula.darwin.domain.helper.Sink)
• com.rubecula.darwin.domain.helper.Censusible
  • com.rubecula.darwin.domain.helper.Allele (also extends com.rubecula.darwin.domain.helper.Attribute, com.rubecula.darwin.domain.helper.Basic, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
  • com.rubecula.darwin.domain.helper.Colony (also extends java.lang.Cloneable, com.rubecula.darwin.foundation.Countable, com.rubecula.darwin.domain.helper.Insular, com.rubecula.darwin.foundation.Theological, com.rubecula.darwin.foundation.Visualizable)
  • com.rubecula.darwin.domain.helper.EcoFactor (also extends com.rubecula.darwin.domain.helper.Attribute, com.rubecula.darwin.foundation.Individual)
  • com.rubecula.darwin.domain.helper.Environment (also extends com.rubecula.darwin.domain.helper.CacheSignature, java.lang.Cloneable, com.rubecula.darwin.foundation.Visualizable)
  • com.rubecula.darwin.domain.helper.Gene (also extends com.rubecula.darwin.domain.helper.Basic, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
  • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Genes, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
    • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Nuclear (also extends com.rubecula.darwin.domain.helper.Genetic)
  • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.foundation.ComparableValue, com.rubecula.darwin.domain.helper.EnvironmentListener, com.rubecula.darwin.domain.helper.Genetic, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Mortal)
  • com.rubecula.darwin.domain.helper.Phenotype (also extends com.rubecula.darwin.domain.helper.Fit, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.TraitMap)
  • com.rubecula.darwin.domain.helper.Population (also extends com.rubecula.darwin.foundation.Generational, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.PopulationExposed, com.rubecula.darwin.foundation.Terminal, com.rubecula.darwin.foundation.Theological)
  • com.rubecula.darwin.domain.helper.Taxon (also extends com.rubecula.darwin.foundation.Evolvable, com.rubecula.darwin.domain.helper.HasPhenotypeCache, com.rubecula.darwin.domain.helper.Registry)
  • com.rubecula.darwin.domain.helper.Trait (also extends com.rubecula.darwin.domain.helper.Expression, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
  • com.rubecula.darwin.domain.helper.TraitMap (also extends com.rubecula.darwin.domain.helper.CacheSignature, net.sf.tostring0.Identifiable)
    • com.rubecula.darwin.domain.helper.Phenotype (also extends com.rubecula.darwin.domain.helper.Fit, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
  • com.rubecula.darwin.foundation.Visualizable (also extends com.rubecula.darwin.foundation.Countable, net.sf.tostring0.Identifiable)
    • com.rubecula.darwin.domain.helper.Colony (also extends java.lang.Cloneable, com.rubecula.darwin.foundation.Countable, com.rubecula.darwin.domain.helper.Insular, com.rubecula.darwin.foundation.Theological)
    • com.rubecula.darwin.domain.helper.Environment (also extends com.rubecula.darwin.domain.helper.CacheSignature, java.lang.Cloneable)
• com.rubecula.darwin.domain.genetics.Chancy
• com.rubecula.darwin.foundation.Clocked
  • com.rubecula.darwin.evolution.Evolution (also extends com.rubecula.darwin.evolution.Evolver, java.lang.Runnable)
  • com.rubecula.darwin.evolution.Evolver
    • com.rubecula.darwin.evolution.Evolution (also extends java.lang.Runnable)
• com.rubecula.darwin.evolution.ClockWatcher
• java.lang.Cloneable
  • com.rubecula.darwin.domain.helper.Colony (also extends com.rubecula.darwin.foundation.Countable, com.rubecula.darwin.domain.helper.Insular, com.rubecula.darwin.foundation.Theological, com.rubecula.darwin.foundation.Visualizable)
  • com.rubecula.darwin.domain.helper.Environment (also extends com.rubecula.darwin.domain.helper.CacheSignature, com.rubecula.darwin.foundation.Visualizable)
• java.io.Closeable
  • com.rubecula.darwin.domain.helper.Sink (also extends java.lang.Appendable, java.io.Flushable)
    • com.rubecula.darwin.domain.helper.SinkCensus (also extends com.rubecula.darwin.domain.helper.Census)
  • com.rubecula.darwin.domain.helper.SinkCensus (also extends com.rubecula.darwin.domain.helper.Census, com.rubecula.darwin.domain.helper.Sink)
• com.rubecula.darwin.visualization.Colorable
• java.lang.Comparable<T>
  • com.rubecula.darwin.foundation.ComparableValue (also extends com.rubecula.darwin.foundation.Valuable)
    • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.EnvironmentListener, com.rubecula.darwin.domain.helper.Genetic, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Mortal)
  • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.ComparableValue, com.rubecula.darwin.domain.helper.EnvironmentListener, com.rubecula.darwin.domain.helper.Genetic, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Mortal)
• com.rubecula.darwin.visualization.ControlAction
  • com.rubecula.darwin.visualization.swing.Interacter (also extends com.rubecula.darwin.visualization.swing.Paints)
• com.rubecula.darwin.visualization.swing.ControlPanel
• com.rubecula.darwin.foundation.Countable
  • com.rubecula.darwin.domain.helper.Colony (also extends java.lang.Cloneable, com.rubecula.darwin.domain.helper.Insular, com.rubecula.darwin.foundation.Theological, com.rubecula.darwin.foundation.Visualizable)
  • com.rubecula.darwin.domain.helper.Environment (also extends com.rubecula.darwin.domain.helper.CacheSignature, java.lang.Cloneable, com.rubecula.darwin.foundation.Visualizable)
  • com.rubecula.darwin.domain.helper.Genomic (also extends net.sf.tostring0.Identifiable, com.rubecula.darwin.domain.helper.Ploidy, com.rubecula.darwin.domain.helper.Replicator)
  • com.rubecula.darwin.domain.helper.Population (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Generational, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.PopulationExposed, com.rubecula.darwin.foundation.Terminal, com.rubecula.darwin.foundation.Theological)
  • com.rubecula.darwin.domain.helper.PopulationExposed
    • com.rubecula.darwin.domain.helper.Population (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Generational, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.foundation.Terminal, com.rubecula.darwin.foundation.Theological)
  • com.rubecula.darwin.foundation.Visualizable (also extends com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable)
    • com.rubecula.darwin.domain.helper.Colony (also extends java.lang.Cloneable, com.rubecula.darwin.foundation.Countable, com.rubecula.darwin.domain.helper.Insular, com.rubecula.darwin.foundation.Theological)
    • com.rubecula.darwin.domain.helper.Environment (also extends com.rubecula.darwin.domain.helper.CacheSignature, java.lang.Cloneable)
  • com.rubecula.darwin.visualization.VisualizationModel
• com.rubecula.darwin.domain.genetics.Dominance
• com.rubecula.darwin.domain.helper.EitherOr
• com.rubecula.darwin.domain.helper.EnvironmentListener
  • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.ComparableValue, com.rubecula.darwin.domain.helper.Genetic, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Mortal)
• com.rubecula.darwin.domain.environment.EnvironmentNode
• com.rubecula.jexpression.EvalExpression
  • com.rubecula.darwin.domain.genetics.Choosy
  • com.rubecula.darwin.domain.genetics.Desirable
  • com.rubecula.jexpression.EvalExpressionMutable
    • com.rubecula.darwin.domain.genetics.Choosy
    • com.rubecula.darwin.domain.genetics.Desirable
• java.util.EventListener
  • java.awt.event.ActionListener
    • com.rubecula.darwin.visualization.swing.OptionsPanel
  • com.rubecula.darwin.visualization.swing.OptionsPanel
• com.rubecula.darwin.evolution.Evolutionary
• com.rubecula.darwin.domain.helper.Expresser
• com.rubecula.darwin.domain.environment.ExpresserFunction
• com.rubecula.darwin.domain.helper.Expression
  • com.rubecula.darwin.domain.helper.ExPhen
  • com.rubecula.darwin.domain.helper.Trait (also extends com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
• com.rubecula.darwin.domain.helper.Fecundity
• com.rubecula.darwin.domain.helper.Fit
  • com.rubecula.darwin.domain.helper.Phenotype (also extends net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.TraitMap)
• com.rubecula.darwin.domain.helper.Fitness
• java.io.Flushable
  • com.rubecula.darwin.domain.helper.Sink (also extends java.lang.Appendable, java.io.Closeable)
    • com.rubecula.darwin.domain.helper.SinkCensus (also extends com.rubecula.darwin.domain.helper.Census)
  • com.rubecula.darwin.domain.helper.SinkCensus (also extends com.rubecula.darwin.domain.helper.Census, com.rubecula.darwin.domain.helper.Sink)
• com.rubecula.darwin.foundation.FunctionListener
• com.rubecula.darwin.foundation.Generational
  • com.rubecula.darwin.foundation.Evolvable (also extends net.sf.tostring0.Identifiable, com.rubecula.darwin.foundation.Terminal, com.rubecula.darwin.foundation.Theological)
    • com.rubecula.darwin.domain.helper.Taxon (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.HasPhenotypeCache, com.rubecula.darwin.domain.helper.Registry)
  • com.rubecula.darwin.domain.helper.Population (also extends com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.PopulationExposed, com.rubecula.darwin.foundation.Terminal, com.rubecula.darwin.foundation.Theological)
  • com.rubecula.darwin.domain.helper.Taxon (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Evolvable, com.rubecula.darwin.domain.helper.HasPhenotypeCache, com.rubecula.darwin.domain.helper.Registry)
• com.rubecula.darwin.domain.helper.GenerationListener
• com.rubecula.darwin.domain.helper.Genetic
  • com.rubecula.darwin.domain.world.Asexual
  • com.rubecula.darwin.domain.helper.Nuclear (also extends com.rubecula.darwin.domain.helper.Censusible)
  • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.ComparableValue, com.rubecula.darwin.domain.helper.EnvironmentListener, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Mortal)
• com.rubecula.darwin.foundation.HasExpressions
  • com.rubecula.darwin.domain.helper.FitnessEngine (also extends com.rubecula.darwin.domain.helper.CacheSignature)
• com.rubecula.darwin.domain.world.HasMean
• com.rubecula.darwin.domain.helper.HasPhenotypeCache
  • com.rubecula.darwin.domain.helper.Realm
  • com.rubecula.darwin.domain.helper.Taxon (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Evolvable, com.rubecula.darwin.domain.helper.Registry)
• com.rubecula.darwin.domain.genetics.HasSexChromosome
• net.sf.tostring0.Identifiable
  • com.rubecula.darwin.domain.helper.Allele (also extends com.rubecula.darwin.domain.helper.Attribute, com.rubecula.darwin.domain.helper.Basic, com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.IToString)
  • com.rubecula.darwin.foundation.Best<T> (also extends com.rubecula.darwin.foundation.Valuable)
  • com.rubecula.darwin.domain.helper.Chromosome (also extends net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Progenitor, com.rubecula.darwin.domain.helper.SexLinked)
  • com.rubecula.darwin.domain.helper.Colony (also extends java.lang.Cloneable, com.rubecula.darwin.foundation.Countable, com.rubecula.darwin.domain.helper.Insular, com.rubecula.darwin.foundation.Theological, com.rubecula.darwin.foundation.Visualizable)
  • com.rubecula.darwin.foundation.ComparableValue (also extends java.lang.Comparable<T>, com.rubecula.darwin.foundation.Valuable)
    • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.EnvironmentListener, com.rubecula.darwin.domain.helper.Genetic, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Mortal)
  • com.rubecula.darwin.domain.helper.EcoFactor (also extends com.rubecula.darwin.domain.helper.Attribute, com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Individual)
  • com.rubecula.darwin.domain.helper.Environment (also extends com.rubecula.darwin.domain.helper.CacheSignature, java.lang.Cloneable, com.rubecula.darwin.foundation.Visualizable)
  • com.rubecula.darwin.foundation.Evolvable (also extends com.rubecula.darwin.foundation.Generational, com.rubecula.darwin.foundation.Terminal, com.rubecula.darwin.foundation.Theological)
    • com.rubecula.darwin.domain.helper.Taxon (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.HasPhenotypeCache, com.rubecula.darwin.domain.helper.Registry)
  • com.rubecula.darwin.domain.helper.FitnessFunction
  • com.rubecula.darwin.foundation.Function (also extends com.rubecula.jexpression.Valuable)
  • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Genomic (also extends com.rubecula.darwin.foundation.Countable, com.rubecula.darwin.domain.helper.Ploidy, com.rubecula.darwin.domain.helper.Replicator)
  • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Genes, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
    • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.foundation.Individual
    • com.rubecula.darwin.domain.helper.EcoFactor (also extends com.rubecula.darwin.domain.helper.Attribute, com.rubecula.darwin.domain.helper.Censusible)
    • com.rubecula.darwin.domain.helper.Mortal
      • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.ComparableValue, com.rubecula.darwin.domain.helper.EnvironmentListener, com.rubecula.darwin.domain.helper.Genetic, net.sf.tostring0.IToString)
    • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.ComparableValue, com.rubecula.darwin.domain.helper.EnvironmentListener, com.rubecula.darwin.domain.helper.Genetic, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Mortal)
  • com.rubecula.darwin.domain.helper.Locus (also extends net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Progenitor)
  • com.rubecula.darwin.domain.helper.Meiosis
  • com.rubecula.darwin.domain.helper.Mortal
    • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.ComparableValue, com.rubecula.darwin.domain.helper.EnvironmentListener, com.rubecula.darwin.domain.helper.Genetic, net.sf.tostring0.IToString)
  • com.rubecula.darwin.domain.helper.Mutator
  • com.rubecula.darwin.foundation.Nameable
  • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.ComparableValue, com.rubecula.darwin.domain.helper.EnvironmentListener, com.rubecula.darwin.domain.helper.Genetic, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Mortal)
  • com.rubecula.darwin.domain.helper.Pharacter (also extends com.rubecula.darwin.domain.helper.SexLinked)
  • com.rubecula.darwin.domain.helper.Phenotype (also extends com.rubecula.darwin.domain.helper.Fit, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.TraitMap)
  • com.rubecula.darwin.domain.helper.Population (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Generational, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.PopulationExposed, com.rubecula.darwin.foundation.Terminal, com.rubecula.darwin.foundation.Theological)
  • com.rubecula.darwin.domain.helper.Taxon (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Evolvable, com.rubecula.darwin.domain.helper.HasPhenotypeCache, com.rubecula.darwin.domain.helper.Registry)
  • com.rubecula.darwin.domain.helper.Trait (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Expression, net.sf.tostring0.IToString)
  • com.rubecula.darwin.domain.helper.TraitMap (also extends com.rubecula.darwin.domain.helper.CacheSignature, com.rubecula.darwin.domain.helper.Censusible)
    • com.rubecula.darwin.domain.helper.Phenotype (also extends com.rubecula.darwin.domain.helper.Fit, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
  • com.rubecula.darwin.foundation.Valuable
    • com.rubecula.darwin.foundation.Best<T> (also extends net.sf.tostring0.Identifiable)
    • com.rubecula.darwin.foundation.ComparableValue (also extends java.lang.Comparable<T>)
      • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.EnvironmentListener, com.rubecula.darwin.domain.helper.Genetic, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Mortal)
    • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.ComparableValue, com.rubecula.darwin.domain.helper.EnvironmentListener, com.rubecula.darwin.domain.helper.Genetic, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Mortal)
  • com.rubecula.darwin.domain.helper.Variant (also extends com.rubecula.darwin.domain.helper.Attribute, net.sf.tostring0.IToString)
  • com.rubecula.darwin.foundation.Visualizable (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Countable)
    • com.rubecula.darwin.domain.helper.Colony (also extends java.lang.Cloneable, com.rubecula.darwin.foundation.Countable, com.rubecula.darwin.domain.helper.Insular, com.rubecula.darwin.foundation.Theological)
    • com.rubecula.darwin.domain.helper.Environment (also extends com.rubecula.darwin.domain.helper.CacheSignature, java.lang.Cloneable)
• com.rubecula.darwin.domain.helper.Insular
  • com.rubecula.darwin.domain.helper.Colony (also extends java.lang.Cloneable, com.rubecula.darwin.foundation.Countable, com.rubecula.darwin.foundation.Theological, com.rubecula.darwin.foundation.Visualizable)
• java.lang.Iterable<T>
  • java.util.Collection<E>
    • com.rubecula.darwin.domain.helper.Genes (also extends com.rubecula.darwin.domain.helper.Basic, java.util.List<E>)
      • com.rubecula.darwin.domain.helper.Genome
      • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
        • com.rubecula.darwin.domain.helper.Genome
    • com.rubecula.darwin.domain.helper.Genome
    • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Genes, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
      • com.rubecula.darwin.domain.helper.Genome
    • java.util.List<E>
      • com.rubecula.darwin.domain.helper.Genes (also extends com.rubecula.darwin.domain.helper.Basic)
        • com.rubecula.darwin.domain.helper.Genome
        • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
          • com.rubecula.darwin.domain.helper.Genome
      • com.rubecula.darwin.domain.helper.Genome
      • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Genes, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
        • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Genes (also extends com.rubecula.darwin.domain.helper.Basic, java.util.List<E>)
    • com.rubecula.darwin.domain.helper.Genome
    • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
      • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Genes, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
    • com.rubecula.darwin.domain.helper.Genome
  • java.util.List<E>
    • com.rubecula.darwin.domain.helper.Genes (also extends com.rubecula.darwin.domain.helper.Basic)
      • com.rubecula.darwin.domain.helper.Genome
      • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
        • com.rubecula.darwin.domain.helper.Genome
    • com.rubecula.darwin.domain.helper.Genome
    • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Genes, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Ploidy)
      • com.rubecula.darwin.domain.helper.Genome
• net.sf.tostring0.IToString
  • com.rubecula.darwin.domain.helper.Allele (also extends com.rubecula.darwin.domain.helper.Attribute, com.rubecula.darwin.domain.helper.Basic, com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.Identifiable)
  • com.rubecula.darwin.domain.helper.Chromosome (also extends net.sf.tostring0.Identifiable, com.rubecula.darwin.domain.helper.Progenitor, com.rubecula.darwin.domain.helper.SexLinked)
  • com.rubecula.darwin.domain.helper.Gene (also extends com.rubecula.darwin.domain.helper.Basic, com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Ploidy)
  • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Genes, net.sf.tostring0.Identifiable, com.rubecula.darwin.domain.helper.Ploidy)
    • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Locus (also extends net.sf.tostring0.Identifiable, com.rubecula.darwin.domain.helper.Progenitor)
  • com.rubecula.darwin.domain.helper.Organism (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.ComparableValue, com.rubecula.darwin.domain.helper.EnvironmentListener, com.rubecula.darwin.domain.helper.Genetic, com.rubecula.darwin.domain.helper.Mortal)
  • com.rubecula.darwin.domain.helper.Phenotype (also extends com.rubecula.darwin.domain.helper.Fit, net.sf.tostring0.Identifiable, com.rubecula.darwin.domain.helper.TraitMap)
  • com.rubecula.darwin.domain.helper.Population (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Generational, net.sf.tostring0.Identifiable, com.rubecula.darwin.domain.helper.PopulationExposed, com.rubecula.darwin.foundation.Terminal, com.rubecula.darwin.foundation.Theological)
  • com.rubecula.darwin.domain.helper.Trait (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Expression, net.sf.tostring0.Identifiable)
  • com.rubecula.darwin.domain.helper.Variant (also extends com.rubecula.darwin.domain.helper.Attribute, net.sf.tostring0.Identifiable)
• com.rubecula.darwin.domain.world.Managed
• com.rubecula.darwin.domain.helper.MateChoice
• com.rubecula.darwin.domain.helper.Mating
• com.rubecula.darwin.domain.helper.Mortality
• com.rubecula.util.Noop
• com.rubecula.darwin.domain.environment.NumericalTrait
• com.rubecula.darwin.visualization.Painter
• com.rubecula.darwin.visualization.swing.Paints
  • com.rubecula.darwin.visualization.swing.Interacter (also extends com.rubecula.darwin.visualization.ControlAction)
• com.rubecula.util.random.Peekable
• com.rubecula.darwin.domain.helper.Phenome
• com.rubecula.darwin.domain.helper.Ploidy
  • com.rubecula.darwin.domain.helper.Gene (also extends com.rubecula.darwin.domain.helper.Basic, com.rubecula.darwin.domain.helper.Censusible, net.sf.tostring0.IToString)
  • com.rubecula.darwin.domain.helper.Genome
  • com.rubecula.darwin.domain.helper.Genomic (also extends com.rubecula.darwin.foundation.Countable, net.sf.tostring0.Identifiable, com.rubecula.darwin.domain.helper.Replicator)
  • com.rubecula.darwin.domain.helper.Genotype (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.Genes, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
    • com.rubecula.darwin.domain.helper.Genome
• com.rubecula.darwin.foundation.Predicate<X,Y>
• com.rubecula.darwin.foundation.ProcessBest<T>
• com.rubecula.darwin.domain.helper.Progenitor
  • com.rubecula.darwin.domain.helper.Chromosome (also extends net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.SexLinked)
  • com.rubecula.darwin.domain.helper.Locus (also extends net.sf.tostring0.Identifiable, net.sf.tostring0.IToString)
• com.rubecula.darwin.domain.helper.Quantifiable
• com.rubecula.darwin.domain.helper.Registry
  • com.rubecula.darwin.domain.helper.Taxon (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Evolvable, com.rubecula.darwin.domain.helper.HasPhenotypeCache)
• com.rubecula.darwin.domain.helper.Replicator
  • com.rubecula.darwin.domain.helper.Genomic (also extends com.rubecula.darwin.foundation.Countable, net.sf.tostring0.Identifiable, com.rubecula.darwin.domain.helper.Ploidy)
• java.lang.Runnable
  • com.rubecula.darwin.evolution.Evolution (also extends com.rubecula.darwin.evolution.Evolver)
• com.rubecula.darwin.domain.fitness.SetupFitness
• com.rubecula.darwin.domain.helper.SexLinked
  • com.rubecula.darwin.domain.helper.Chromosome (also extends net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.Progenitor)
  • com.rubecula.darwin.domain.helper.Pharacter (also extends net.sf.tostring0.Identifiable)
• com.rubecula.darwin.domain.helper.Sexual
• com.rubecula.darwin.domain.environment.Susceptible
• com.rubecula.darwin.examples.travelingsalesman.Swap<T>
• com.rubecula.darwin.examples.travelingsalesman.TakesTravelTime
• com.rubecula.darwin.foundation.Terminal
  • com.rubecula.darwin.foundation.Evolvable (also extends com.rubecula.darwin.foundation.Generational, net.sf.tostring0.Identifiable, com.rubecula.darwin.foundation.Theological)
    • com.rubecula.darwin.domain.helper.Taxon (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.HasPhenotypeCache, com.rubecula.darwin.domain.helper.Registry)
  • com.rubecula.darwin.domain.helper.Population (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Generational, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.PopulationExposed, com.rubecula.darwin.foundation.Theological)
  • com.rubecula.darwin.domain.helper.Taxon (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Evolvable, com.rubecula.darwin.domain.helper.HasPhenotypeCache, com.rubecula.darwin.domain.helper.Registry)
• com.rubecula.darwin.visualization.swing.TextMessageable
• com.rubecula.darwin.foundation.Theological
  • com.rubecula.darwin.domain.helper.Colony (also extends java.lang.Cloneable, com.rubecula.darwin.foundation.Countable, com.rubecula.darwin.domain.helper.Insular, com.rubecula.darwin.foundation.Visualizable)
  • com.rubecula.darwin.foundation.Evolvable (also extends com.rubecula.darwin.foundation.Generational, net.sf.tostring0.Identifiable, com.rubecula.darwin.foundation.Terminal)
    • com.rubecula.darwin.domain.helper.Taxon (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.domain.helper.HasPhenotypeCache, com.rubecula.darwin.domain.helper.Registry)
  • com.rubecula.darwin.domain.helper.Population (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Generational, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString, com.rubecula.darwin.domain.helper.PopulationExposed, com.rubecula.darwin.foundation.Terminal)
  • com.rubecula.darwin.domain.helper.Taxon (also extends com.rubecula.darwin.domain.helper.Censusible, com.rubecula.darwin.foundation.Evolvable, com.rubecula.darwin.domain.helper.HasPhenotypeCache, com.rubecula.darwin.domain.helper.Registry)
• com.rubecula.darwin.evolution.Timed
• com.rubecula.darwin.examples.travelingsalesman.TravelTimes
• com.rubecula.jexpression.Valuable
  • com.rubecula.darwin.foundation.Function (also extends net.sf.tostring0.Identifiable)
• com.rubecula.darwin.foundation.Version
• com.rubecula.darwin.domain.world.Viability
• com.rubecula.darwin.foundation.VisualizableListener
• com.rubecula.darwin.visualization.swing.Visualization
• com.rubecula.darwin.visualization.VisualizationFactory
• com.rubecula.darwin.visualization.Visualizer

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • com.rubecula.darwin.domain.fitness.FitnessProblem
    • com.rubecula.darwin.evolution.TimeUnit
    • com.rubecula.darwin.examples.pepperedmoth.WingColor