com.rubecula.darwin.domain.genetics
Class Genomic_Haploid

java.lang.Object
  net.sf.tostring0.AToString
      com.rubecula.darwin.domain.genetics.Genomic_
          com.rubecula.darwin.domain.genetics.Genomic_Haploid

All Implemented Interfaces:

Genomic, Ploidy, Replicator, Countable, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString

Direct Known Subclasses:

Genomic_Asexual

public class Genomic_Haploid
extends Genomic_

Lifespan: permanent. Concrete implementation of Genomic representing the possible genetic information contained in a Taxon. A Genomic_Haploid may contain any number of gene Loci. A Genomic_Haploid is essentially a template for a Genome. Both structures are approximately parallel.
Note that there is a sub-type, Genomic_Asexual, which should normally be used rather than this type.

Version:

$Revision: 1.8 $

Author:

Robin Hillyard

Field Summary

Fields inherited from class com.rubecula.darwin.domain.genetics.Genomic_

_chromosomes, expresserCommon, expressers, LOG

Fields inherited from interface com.rubecula.darwin.domain.helper.Ploidy

DIPLOID, HAPLOID

Fields inherited from interface net.sf.tostring0.IToString

ANGBR_OPEN, ANGBRA_CLSE, BRA_CLSE, BRA_OPEN, BRCE_OPEN, BRCS_CLSE, COLON, LIST_SEPARATOR, MAX_ELEMENTS_DEFAULT, S_MT, S_PERCENT, SEPARATOR, SPACE

Constructor Summary

Genomic_Haploid(java.lang.String identifier, org.apache.commons.math.random.RandomGenerator random, Mutator mutator)
Primary Constructor for a new Genomic_Haploid instance using no meiosis implementation and the given mutator implementation.

Method Summary

Methods inherited from class com.rubecula.darwin.domain.genetics.Genomic_

addChromosome, addChromosome, clearChromosomes, createGamete, equals, express, express, getAlphabet, getChromosome, getChromosomes, getCount, getExpresser, getExpressers, getIdentifier, getLocus, getLocusCount, getMeiosis, getMutator, getPloidy, hashCode, mutate, normalize, putExpresser, setChromosomes, setExpresser, setExpressers, simplify

Methods inherited from class net.sf.tostring0.AToString

toString, toString, toStringBrief, toStringId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

Genomic_Haploid

public Genomic_Haploid(java.lang.String identifier,
                       org.apache.commons.math.random.RandomGenerator random,
                       Mutator mutator)

Primary Constructor for a new Genomic_Haploid instance using no meiosis implementation and the given mutator implementation.

Parameters:

identifier -

random - a random number source

mutator -