Package com.rubecula.darwin.domain.genetics

Genetics

See:
Description

Interface Summary

Chancy
Choosy	This interface defines a method which defines how choosy a female is about finding a mate in the same population.
Desirable	This interface defines a method to get a male's desirability.
Dominance
HasSexChromosome

Class Summary

Allele_	This abstract provides base operations for implementations of Allele, which are specific, competing genes which may appear at a Locus.
Allele_Binary	Abstract type of allele which has two values, based on a boolean.
Allele_Dominance	Lifespan: permanent.
Allele_Sex	Unlike Allele_Dominance, which uses upper and lower case to denote dominance, the two different alleles of the Allele_Sex type are "Y" and "X" for male and female, respectively.
AlleleFactory	Factory Class to create Allele objects.
Chromosome_	Abstract class implementing base methods for the Chromosome interface.
Chromosome_NoSex	Lifespan: permanent.
Chromosome_Sex	lifespan: permanent.
Fecundity_	Base implementation of the Fecundity interface.
Fecundity_Saturated	Lifespan: permanent.
Gene_	This abstract class represents a particular gene at a locus of a genome.
Gene_Diploid	Lifespan: transient.
Gene_Haploid	Lifespan: transient.
GeneFactory	Factory Class to create Gene objects.
Genome_	This abstract class provides base definitions for implementers of Genome, the genetic information contained in an Organism belonging to a Taxon.
Genome_Linear	Lifespan: transient.
GenomeFactory	Factory Class to create Genome objects.
Genomic_	Abstract class implementing base methods for the Genomic interface.
Genomic_Diploid	Lifespan: permanent.
Genomic_Haploid	Lifespan: permanent.
Genotype_	This abstract class provides base definitions for implementers of Genome, the genetic information contained in an Organism belonging to a Taxon.
Locus_	Abstract class defining the base methods and fields for an implementer of Locus.
Locus_Random	Lifespan: permanent.
Locus_Sex	Lifespan: permanent.
Locus_Triversian	Lifespan: permanent.
Mating_	Abstract class to define base methods for implementers of Mating.
Mating_Haldanian	Lifespan: permanent.
MatingFactory	Factory Class to create Mating objects.
Meiosis_	Abstract class which defines the base operations for an implementation of Meiosis.
Meiosis_Chromosome	Lifespan: permanent.
Meiosis_Clone	This is a null-meiosis implementation which is used for haploid genomics (where meiosis doesn't make sense) but where we still need a way of cloning genomes.
Meiosis_Locus	Lifespan: permanent.
Messages
Mortality_	Abstract class which defines the base methods and fields needed to implement the Mortality interface.
Mortality_Reaper	Lifespan: permanent.
Mutator_	Abstract class to define the base methods and fields for instances of Mutator interface.
Mutator_Null	Lifespan: permanent.
Mutator_Random	Lifespan: permanent.
Nuclear_	TODO need a better name for this Nuclear concept.
Nuclear_Clone	Lifespan: transient.
Nuclear_Zygote	Lifespan: transient.
NuclearFactory	Factory Class to create Nuclear objects.

Package com.rubecula.darwin.domain.genetics Description

Genetics

This package models all of the genetic aspects of the framework. More explanation to follow.

Last Updated: 2009-10-05 By: Robin Hillyard