com.rubecula.darwin.domain.genetics
Class Locus_Triversian

java.lang.Object
  net.sf.tostring0.AToString
      com.rubecula.darwin.domain.genetics.Locus_
          com.rubecula.darwin.domain.genetics.Locus_Random
              com.rubecula.darwin.domain.genetics.Locus_Triversian

All Implemented Interfaces:

Locus, Progenitor, SexLinked, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString

public final class Locus_Triversian
extends Locus_Random

Lifespan: permanent. This final concrete implementation of Locus provides a simple scheme for picking an allele based on a Random number source supplied at constructor time. This is a sub-class of Locus_Random.

Named in honor of Robert T. Trivers..

Version:

$Revision: 1.7 $

Author:

Robin Hillyard

Field Summary

Fields inherited from class com.rubecula.darwin.domain.genetics.Locus_Random

_random

Fields inherited from class com.rubecula.darwin.domain.genetics.Locus_

LOG

Fields inherited from interface com.rubecula.darwin.domain.helper.Locus

ID_SEX

Fields inherited from interface net.sf.tostring0.IToString

ANGBR_OPEN, ANGBRA_CLSE, BRA_CLSE, BRA_OPEN, BRCE_OPEN, BRCS_CLSE, COLON, LIST_SEPARATOR, MAX_ELEMENTS_DEFAULT, S_MT, S_PERCENT, SEPARATOR, SPACE

Constructor Summary

Locus_Triversian(java.lang.String identifier, org.apache.commons.math.random.RandomGenerator random)
Construct a new instance of Locus_Triversian using a specific given randomizer.

Method Summary

Methods inherited from class com.rubecula.darwin.domain.genetics.Locus_Random

add, onChange, pickAllele, setAlleles

Methods inherited from class com.rubecula.darwin.domain.genetics.Locus_

addAllele, equals, getAllele, getAlleleMap, getAlleles, getAlleleValues, getChromosome, getFrequencies, getIdentifier, getKey, getParent, getPolygenic, hashCode, isLegal, isSexLinked, makeGene, putAllele, setParent, setPolygenic, size

Methods inherited from class net.sf.tostring0.AToString

toString, toString, toStringBrief, toStringId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.sf.tostring0.IToString

toString, toStringBrief, toStringId

Constructor Detail

Locus_Triversian

public Locus_Triversian(java.lang.String identifier,
                        org.apache.commons.math.random.RandomGenerator random)

Construct a new instance of Locus_Triversian using a specific given randomizer. XXX it seems that it's OK, at least in testing, for random to be null. However, we shouldn't allow that, probably.

Parameters:

identifier - the identifier for this locus.

random - an instance of Randomizer.