com.rubecula.darwin.domain.genetics
Class Meiosis_Clone

java.lang.Object
  net.sf.tostring0.AToString
      com.rubecula.darwin.domain.genetics.Meiosis_
          com.rubecula.darwin.domain.genetics.Meiosis_Clone

All Implemented Interfaces:

Meiosis, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString

public final class Meiosis_Clone
extends Meiosis_

This is a null-meiosis implementation which is used for haploid genomics (where meiosis doesn't make sense) but where we still need a way of cloning genomes.

Author:

Robin Hillyard

Field Summary

Fields inherited from class com.rubecula.darwin.domain.genetics.Meiosis_

LOG

Fields inherited from interface net.sf.tostring0.IToString

ANGBR_OPEN, ANGBRA_CLSE, BRA_CLSE, BRA_OPEN, BRCE_OPEN, BRCS_CLSE, COLON, LIST_SEPARATOR, MAX_ELEMENTS_DEFAULT, S_MT, S_PERCENT, SEPARATOR, SPACE

Constructor Summary

Meiosis_Clone(org.apache.commons.math.random.RandomGenerator random)

Method Summary

java.lang.String	doMeiosis(Gene gene, int index) Choose an allele at random for the given locus.
Genome	doMeiosis(Genomic genomic, Genes genes, Chromosome chromosome) This method essentially clones the existing set of genes.

Methods inherited from class com.rubecula.darwin.domain.genetics.Meiosis_

doMeiosisChromosome, getIdentifier, getRandom

Methods inherited from class net.sf.tostring0.AToString

toString, toString, toStringBrief, toStringId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Meiosis_Clone

public Meiosis_Clone(org.apache.commons.math.random.RandomGenerator random)

Parameters:

random -

Method Detail

doMeiosis

public java.lang.String doMeiosis(Gene gene,
                                  int index)

Description copied from class: Meiosis_

Choose an allele at random for the given locus.

Specified by:

doMeiosis in interface Meiosis

Overrides:

doMeiosis in class Meiosis_

Parameters:

gene - the gene on which we are doing the meiosis.

index - if index >=0 then we use it, otherwise we generate a random number between 0 and the gene's ploidy less one.

Returns:

the key of the allele chosen.

See Also:

Meiosis_.doMeiosis(com.rubecula.darwin.domain.helper.Gene, int)

doMeiosis

public Genome doMeiosis(Genomic genomic,
                        Genes genes,
                        Chromosome chromosome)

This method essentially clones the existing set of genes.

Parameters:

genomic -

genes -

chromosome -

Returns:

a haploid genome with loci corresponding to the chromosome (if given)

See Also:

Meiosis.doMeiosis(com.rubecula.darwin.domain.helper.Genomic, com.rubecula.darwin.domain.helper.Genes, com.rubecula.darwin.domain.helper.Chromosome)