com.rubecula.darwin.domain.genetics
Class Genome_Linear

java.lang.Object
  net.sf.tostring0.AToString
      com.rubecula.darwin.foundation.AuditableList<Gene>
          com.rubecula.darwin.domain.genetics.Genotype_
              com.rubecula.darwin.domain.genetics.Genome_
                  com.rubecula.darwin.domain.genetics.Genome_Linear

All Implemented Interfaces:

Basic, CacheSignature, Censusible, Genes, Genome, Genotype, Ploidy, java.lang.Cloneable, java.lang.Iterable<Gene>, java.util.Collection<Gene>, java.util.List<Gene>, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString

public final class Genome_Linear
extends Genome_

Lifespan: transient. Default implementation of Genome interface: just a collection of genes.

Author:

Robin Hillyard

Field Summary

Fields inherited from class com.rubecula.darwin.domain.genetics.Genotype_

_ploidy, LOG

Fields inherited from interface net.sf.tostring0.IToString

ANGBR_OPEN, ANGBRA_CLSE, BRA_CLSE, BRA_OPEN, BRCE_OPEN, BRCS_CLSE, COLON, LIST_SEPARATOR, MAX_ELEMENTS_DEFAULT, S_MT, S_PERCENT, SEPARATOR, SPACE

Fields inherited from interface com.rubecula.darwin.domain.helper.Ploidy

DIPLOID, HAPLOID

Method Summary

Methods inherited from class com.rubecula.darwin.domain.genetics.Genome_

environmentChanged, equals, express, fertilize, getGene, getGenomic, getSex, hashCode, invert, mutate

Methods inherited from class com.rubecula.darwin.domain.genetics.Genotype_

addGene, addGene, addGenes, censusMe, clone, doCensus, getBases, getCensusibleChildren, getGene, getIdentifier, getList, getPloidy, getSignature

Methods inherited from class com.rubecula.darwin.foundation.AuditableList

add, add, addAll, addAll, clear, contains, containsAll, get, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, setList, size, subList, toArray, toArray

Methods inherited from class net.sf.tostring0.AToString

toString, toString, toStringBrief, toStringId

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.rubecula.darwin.domain.helper.Genotype

addGene, addGene, addGenes, doCensus

Methods inherited from interface net.sf.tostring0.IToString

toString, toStringBrief, toStringId

Methods inherited from interface com.rubecula.darwin.domain.helper.Ploidy

getPloidy

Methods inherited from interface com.rubecula.darwin.domain.helper.Genes

getGene

Methods inherited from interface java.util.List

add, add, addAll, addAll, clear, contains, containsAll, get, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray

Methods inherited from interface com.rubecula.darwin.domain.helper.Basic

getBases

Methods inherited from interface com.rubecula.darwin.domain.helper.CacheSignature

getSignature

Methods inherited from interface com.rubecula.darwin.domain.helper.Censusible

censusMe, getCensusibleChildren

Methods inherited from interface net.sf.tostring0.Identifiable

getIdentifier