com.rubecula.darwin.domain.genetics
Class Allele_Binary

java.lang.Object
  net.sf.tostring0.AToString
      com.rubecula.darwin.domain.helper.Attribute_
          com.rubecula.darwin.domain.genetics.Allele_
              com.rubecula.darwin.domain.genetics.Allele_Binary

All Implemented Interfaces:

Allele, Attribute, Basic, CacheSignature, Censusible, EitherOr, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString

Direct Known Subclasses:

Allele_Dominance, Allele_Sex

public abstract class Allele_Binary
extends Allele_
implements EitherOr

Abstract type of allele which has two values, based on a boolean.

Author:

Robin Hillyard

Field Summary

Fields inherited from class com.rubecula.darwin.domain.genetics.Allele_

LOG

Fields inherited from interface net.sf.tostring0.IToString

ANGBR_OPEN, ANGBRA_CLSE, BRA_CLSE, BRA_OPEN, BRCE_OPEN, BRCS_CLSE, COLON, LIST_SEPARATOR, MAX_ELEMENTS_DEFAULT, S_MT, S_PERCENT, SEPARATOR, SPACE

Constructor Summary

Allele_Binary(java.lang.String identifier, boolean value)

Method Summary

java.lang.String	getBases()
boolean	getValueAsBoolean()
void	setBases(java.lang.String[] bases)
void	setValue(java.lang.Object value) set the field Attribute_.value.

Methods inherited from class com.rubecula.darwin.domain.genetics.Allele_

censusMe, getCensusibleChildren, getLocus, getSignature, getStringChars, setLocus, setStringChars, toString

Methods inherited from class com.rubecula.darwin.domain.helper.Attribute_

equals, getAttribute, getIdentifier, getValue, hashCode

Methods inherited from class net.sf.tostring0.AToString

toString, toStringBrief, toStringId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.rubecula.darwin.domain.helper.Attribute

getAttribute, getValue

Methods inherited from interface net.sf.tostring0.IToString

toStringBrief, toStringId

Methods inherited from interface net.sf.tostring0.Identifiable

getIdentifier

Constructor Detail

Allele_Binary

public Allele_Binary(java.lang.String identifier,
                     boolean value)

Parameters:

identifier -

value -

Method Detail

getBases

public java.lang.String getBases()

Specified by:

getBases in interface Basic

Returns:

either _bases sub 0 or sub 1, according to which allele we are.

See Also:

Basic.getBases()

getValueAsBoolean

public boolean getValueAsBoolean()

Specified by:

getValueAsBoolean in interface EitherOr

Returns:

the value as a boolean

See Also:

EitherOr.getValueAsBoolean()

setBases

public void setBases(java.lang.String[] bases)

Parameters:

bases - the base strings for the true- and false- valued alleles

setValue

public void setValue(java.lang.Object value)

Description copied from class: Attribute_

set the field Attribute_.value.

Specified by:

setValue in interface Attribute

Overrides:

setValue in class Allele_

Parameters:

value - the new value for the attribute.

See Also:

Attribute_.setValue(java.lang.Object)