com.rubecula.darwin.domain.environment
Class Phenome_

java.lang.Object
  net.sf.tostring0.AToString
      com.rubecula.darwin.domain.environment.Phenome_

All Implemented Interfaces:

Phenome, net.sf.tostring0.IToString

Direct Known Subclasses:

Phenome_Gouldian, Phenome_Numerical

public abstract class Phenome_
extends net.sf.tostring0.AToString
implements Phenome

Abstract class defining base methods and fields for implementations of Phenome interface.

Author:

Robin Hillyard XXX consider extending StringHash instead.

Field Summary

protected static org.apache.commons.logging.Log

LOG The logger for this class.

Fields inherited from interface net.sf.tostring0.IToString

ANGBR_OPEN, ANGBRA_CLSE, BRA_CLSE, BRA_OPEN, BRCE_OPEN, BRCS_CLSE, COLON, LIST_SEPARATOR, MAX_ELEMENTS_DEFAULT, S_MT, S_PERCENT, SEPARATOR, SPACE

Constructor Summary

protected

Phenome_(FitnessEngine fitnessFunction) This constructs a new (empty) Phenome belonging to a Taxon.

Method Summary

int	addCharacter(Pharacter character) Add a character to this phenome.
boolean	equals(java.lang.Object obj)
Pharacter	getCharacter(java.lang.String id) Get the character whose identifier matches id.
java.util.Collection<java.lang.String>	getCharacterKeys()
java.util.Collection<Pharacter>	getCharacters()
java.lang.Object	getData() XXX
FitnessEngine	getFitnessEngine() XXX
int	hashCode()
void	setCharacters(java.util.Collection<? extends Pharacter> characters) Set the phenotypic characters, usually by reflection/dependeny injection.
void	setData(java.lang.Object data) XXX
int	size()

Methods inherited from class net.sf.tostring0.AToString

toString, toString, toStringBrief, toStringId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

LOG

protected static final org.apache.commons.logging.Log LOG

The logger for this class.

Constructor Detail

Phenome_

protected Phenome_(FitnessEngine fitnessFunction)

This constructs a new (empty) Phenome belonging to a Taxon.

Parameters:

fitnessFunction - the implementer of FitnessEngine which evaluates the fintness of a phenome for an environemnt.

Method Detail

addCharacter

public int addCharacter(Pharacter character)

Description copied from interface: Phenome

Add a character to this phenome.

Specified by:

addCharacter in interface Phenome

Returns:

the index of the new character.

See Also:

Phenome.addCharacter(com.rubecula.darwin.domain.helper.Pharacter)

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class java.lang.Object

See Also:

Object.equals(java.lang.Object)

getCharacter

public Pharacter getCharacter(java.lang.String id)

Get the character whose identifier matches id.

Specified by:

getCharacter in interface Phenome

Returns:

the character with given id, else null

See Also:

Phenome.getCharacter(java.lang.String)

getCharacterKeys

public java.util.Collection<java.lang.String> getCharacterKeys()

Specified by:

getCharacterKeys in interface Phenome

Returns:

the set of character keys for this Phenome

getCharacters

public java.util.Collection<Pharacter> getCharacters()

Specified by:

getCharacters in interface Phenome

Returns:

the characters

getData

public java.lang.Object getData()

XXX

Specified by:

getData in interface Phenome

Returns:

application-specific data.

See Also:

Phenome.getData()

getFitnessEngine

public FitnessEngine getFitnessEngine()

XXX

Specified by:

getFitnessEngine in interface Phenome

Returns:

an implementation of FitnessEngine.

See Also:

Phenome.getFitnessEngine()

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

See Also:

Object.hashCode()

setCharacters

public void setCharacters(java.util.Collection<? extends Pharacter> characters)

Set the phenotypic characters, usually by reflection/dependeny injection.

Parameters:

characters -

setData

public void setData(java.lang.Object data)

XXX

Specified by:

setData in interface Phenome

Parameters:

data - application-specific data.

See Also:

Phenome.setData(java.lang.Object)

size

public int size()

Specified by:

size in interface Phenome

Returns:

the number of characters for this phenome.

See Also:

Phenome.size()