Package com.rubecula.darwin.domain.environment

Interface Summary

EnvironmentNode
ExpresserFunction	Defines the operation which takes an Allele and generates a Trait.
NumericalTrait	Defines how to get a numerical value for a trait.
Susceptible	This interface defines a method which makes an Environment susceptible to change due to the extended phenotypes of organisms.

Class Summary

EcoFactor_	Abstract class providing base functionality for implementers of EcoFactor.
EcoFactor_Humboldtian
EcoFactor_Number	This abstract implementer of EcoFactor represents an environmental factor with a double value.
EcoSystem	The type holds a map of eco factors for an environment.
Environment_	Abstract class defining base methods which implement Environment interface.
Environment_Susceptible	Abstract class for an Environment which is Susceptible to extended-phenotype-invoked changes.
EnvironmentChangeEvent	This class defines a Runnable event which changes the value of an eco factor in an environment.
EnvironmentListener_	Abstract base class to implement EnvironmentListener.
EnvironmentListener_Writer
ExPhen_	Base implementation of an extended phenotype.
ExPhen_Castor	The default implementation of ExPhen, named in honor of the nature's engineer, the Beaver (genus Castor) which creates some of the largest extended phenotypes found in the animal kingdom, that is to say the lakes formed by Beaver dams (we humans create even bigger ones, like the Great Wall of China).
ExPhenFactory	Factory Class to create ExPhen objects.
Expresser_	Base (abstract) implementation of Expresser.
Expresser_Direct	This expresser is suitable for haploid genomes.
Expresser_Function	This expresser is suitable for haploid genomes.
Pharacter_	Base implementation of Pharacter (a Phenotypic Character).
Pharacter_Fisherian	Lifespan: permanent.
Pharacter_Sex	Lifespan: permanent singleton.
Phenome_	Abstract class defining base methods and fields for implementations of Phenome interface.
Phenome_Gouldian	Lifespan: permanent.
Phenome_Numerical	Lifespan: permanent.
Phenotype_	Abstract class to define the base methods and fields for an implementation of Phenotype.
Phenotype_Dawkinsian	Lifespan: transient.
PhenotypeFactory	Factory Class to create Phenotype objects.
Trait_	Base implementation of Trait.
Trait_Discrete	Lifespan: transient.
Trait_Variable	Concrete implementation of Trait which is based on a variable value.
Trait_VisitingSequence
TraitFactory	Factory Class to create Trait objects.
TraitMap_	Abstract class to define base methods and fields for a String-keyed map of Variant objects.
TraitMap_ReadOnly
Variant_	This abstract class defines the base methods and fields for an implementation of Variant.
Variant_Basic	Lifespan: permanent.
Variant_Numeric	Numerical Variant.