com.rubecula.darwin.domain.world
Class Organism_Asexual

java.lang.Object
  net.sf.tostring0.AToString
      com.rubecula.darwin.domain.world.Organism_
          com.rubecula.darwin.domain.world.Organism_Asexual

All Implemented Interfaces:

Censusible, EnvironmentListener, Genetic, Mortal, Organism, Asexual, ComparableValue, Individual, Valuable, java.lang.Cloneable, java.lang.Comparable<Valuable>, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString

Direct Known Subclasses:

Organism_TS

public class Organism_Asexual
extends Organism_
implements Asexual

This concrete class represents an individual organism within a Taxon . It contains a Genome from which may be derived a Phenotype in the context of a Genomic.

Version:

$Revision: 1.45 $

Author:

Robin Hillyard

Field Summary

Fields inherited from class com.rubecula.darwin.domain.world.Organism_

_identifier, _nuclear, LOG

Fields inherited from interface net.sf.tostring0.IToString

ANGBR_OPEN, ANGBRA_CLSE, BRA_CLSE, BRA_OPEN, BRCE_OPEN, BRCS_CLSE, COLON, LIST_SEPARATOR, MAX_ELEMENTS_DEFAULT, S_MT, S_PERCENT, SEPARATOR, SPACE

Constructor Summary

protected

Organism_Asexual() Deprecated.

Method Summary

Mate	createMate(MateChoice chooser, Organism female) Create a Mate object based on this (male) organism and its desirability to the given female.
Mating	createPairBond(MateChoice chooser, Lek lek, Lek alternativeLek)
java.util.Collection<Organism>	getAsexualProgeny(int howMany)
static Organism	makeProgeny(java.lang.String identifier, Colony colony, Genome genome)
Organism	reproduce(java.lang.String identifier, Genomic genomic) Method to perform asexual reproduction.
static Organism	seed(Colony colony) Class method to create a new Organism without parents (for seeding a population).

Methods inherited from class com.rubecula.darwin.domain.world.Organism_

age, censusMe, clone, compareTo, equals, getAge, getCensusibleChildren, getColony, getFitness, getGenome, getIdentifier, getMortality, getNuclear, getPhenotype, getValue, getVisualizable, hashCode, isMortal, isNew, isViable, isVisible, normalizeGenome, onEnvironmentChange, setColony, setViability, setViable

Methods inherited from class net.sf.tostring0.AToString

toString, toString, toStringBrief, toStringId

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.rubecula.darwin.domain.helper.Genetic

getGenome

Methods inherited from interface net.sf.tostring0.IToString

toString, toStringBrief, toStringId

Constructor Detail

Organism_Asexual

@Deprecated
protected Organism_Asexual()

Deprecated.

Unused constructor required only for type hierarchy purposes

Method Detail

makeProgeny

public static Organism makeProgeny(java.lang.String identifier,
                                   Colony colony,
                                   Genome genome)

Parameters:

identifier -

colony -

genome -

Returns:

a new asexual organism which is the result of calling NuclearFactory.makeClone(Genome, String) and passing its result to OrganismFactory.makeOrganism(Nuclear, Colony, String) .

seed

public static Organism seed(Colony colony)

Class method to create a new Organism without parents (for seeding a population).

Parameters:

colony - the population to be seeded.

Returns:

a new organism created out of "whole cloth".

createMate

public Mate createMate(MateChoice chooser,
                       Organism female)

Description copied from interface: Organism

Create a Mate object based on this (male) organism and its desirability to the given female.

Specified by:

createMate in interface Organism

Parameters:

chooser - the object which will calculate the desirability of this organism to the given female.

female - the organism looking for a mate.

Returns:

null always

See Also:

Organism.createMate(com.rubecula.darwin.domain.helper.MateChoice, com.rubecula.darwin.domain.helper.Organism)

createPairBond

public Mating createPairBond(MateChoice chooser,
                             Lek lek,
                             Lek alternativeLek)

Specified by:

createPairBond in interface Organism

lek - the breeding males from which we will choose a mate

alternativeLek - may be null

Returns:

null always

See Also:

Organism.createPairBond(com.rubecula.darwin.domain.helper.MateChoice, Lek, Lek)

getAsexualProgeny

public java.util.Collection<Organism> getAsexualProgeny(int howMany)

Specified by:

getAsexualProgeny in interface Organism

Parameters:

howMany -

Returns:

a collection of progeny from the given organism.

reproduce

public Organism reproduce(java.lang.String identifier,
                          Genomic genomic)

Description copied from interface: Asexual

Method to perform asexual reproduction.

Specified by:

reproduce in interface Asexual

Parameters:

identifier - an identifier.

genomic - the genomic for this population.

Returns:

a new Organism which has been added to this Organism's population.

See Also:

Asexual.reproduce(java.lang.String, com.rubecula.darwin.domain.helper.Genomic)