Uses of Interface
com.rubecula.darwin.domain.helper.Genes

Packages that use Genes

com.rubecula.darwin.domain.genetics	Genetics
com.rubecula.darwin.domain.helper	Darwin

Uses of Genes in com.rubecula.darwin.domain.genetics

Classes in com.rubecula.darwin.domain.genetics that implement Genes

class	Genome_ This abstract class provides base definitions for implementers of Genome, the genetic information contained in an Organism belonging to a Taxon.
class	Genome_Linear Lifespan: transient.
class	Genotype_ This abstract class provides base definitions for implementers of Genome, the genetic information contained in an Organism belonging to a Taxon.

Methods in com.rubecula.darwin.domain.genetics that return Genes

Genes

Genome_.invert() This implementation of invert() assumes that the genome is haploid.

Methods in com.rubecula.darwin.domain.genetics with parameters of type Genes

void	Genotype_.addGenes(Genes genes) Iteratively call Genotype_.addGene(Gene) for each of the genes provided.
Genome	Genomic_.createGamete(Genes genes) XXX This is very similar to the way SeedGenome works.
Genome	Meiosis_Locus.doMeiosis(Genomic genomic, Genes genes, Chromosome chromosome) This method does meiosis for a set of genes.
Genome	Meiosis_Clone.doMeiosis(Genomic genomic, Genes genes, Chromosome chromosome) This method essentially clones the existing set of genes.
Genome	Meiosis_Chromosome.doMeiosis(Genomic genomic, Genes genes, Chromosome chromosome) This method does meiosis for a set of genes.
protected Genome	Meiosis_.doMeiosisChromosome(Genomic genomic, Genes genes, Chromosome chromosome, int index)
void	Genomic_.express(Phenotype phenotype, Colony colony, Genes genes) Standard implementation of express for this Genomic.
void	Genomic_.express(Phenotype phenotype, Genes genes) Standard implementation of this method simply calls Genomic_.express(Phenotype, Colony, Genes) with null population.
Genome	Genome_.fertilize(Genes other) Method to fuse this haploid genome with other genome into a new diploid genome.
static Genome	GenomeFactory.makeZygote(Genome gameteX, Genes gameteY)

Uses of Genes in com.rubecula.darwin.domain.helper

Subinterfaces of Genes in com.rubecula.darwin.domain.helper

interface	Genome Defines the genetic information contained in an Organism belonging to a Taxon.
interface	Genotype A Genotype is a (diploid or haploid) set of genes which can be manipulated.

Methods in com.rubecula.darwin.domain.helper that return Genes

Genes

Genome.invert()

Methods in com.rubecula.darwin.domain.helper with parameters of type Genes

void	Genotype.addGenes(Genes genes) Add the given genes to this Genotype.
Genome	Replicator.createGamete(Genes genes) Method to create a "gamete", a single (haploid) set of genes, for example an X or Y chromosome in the human genome.
Genome	Meiosis.doMeiosis(Genomic genomic, Genes genes, Chromosome chromosome) This method determines which alleles will be chosen for a complete chromosome.
void	Genomic.express(Phenotype phenotype, Colony colony, Genes genes) Method to create a new phenotype from a collection of genes by expressing each and every gene, one at a time, using the appropriate Expresser.
void	Genomic.express(Phenotype phenotype, Genes genes) Method to create a new phenotype from a collection of genes by expressing each and every gene, one at a time, using the appropriate Expresser.
Genome	Genome.fertilize(Genes other) Method to fuse this haploid genome with other genome into a new diploid genome.