com.rubecula.darwin.domain.genetics
Class Meiosis_Locus

java.lang.Object
  net.sf.tostring0.AToString
      com.rubecula.darwin.domain.genetics.Meiosis_
          com.rubecula.darwin.domain.genetics.Meiosis_Locus

All Implemented Interfaces:

Meiosis, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString

public final class Meiosis_Locus
extends Meiosis_

Lifespan: permanent. Default implementation for the Meiosis interface. Its behavior is to choose alleles purely randomly. Formerly known as Meiosis_Random.

Version:

$Revision: 1.14 $

Author:

Robin Hillyard

Field Summary

Fields inherited from class com.rubecula.darwin.domain.genetics.Meiosis_

LOG

Fields inherited from interface net.sf.tostring0.IToString

ANGBR_OPEN, ANGBRA_CLSE, BRA_CLSE, BRA_OPEN, BRCE_OPEN, BRCS_CLSE, COLON, LIST_SEPARATOR, MAX_ELEMENTS_DEFAULT, S_MT, S_PERCENT, SEPARATOR, SPACE

Constructor Summary

Meiosis_Locus(org.apache.commons.math.random.RandomGenerator random)
Public primary constructor for an implementer of Meiosis with given random number source.

Method Summary

Genome

doMeiosis(Genomic genomic, Genes genes, Chromosome chromosome) This method does meiosis for a set of genes.

Methods inherited from class com.rubecula.darwin.domain.genetics.Meiosis_

doMeiosis, doMeiosisChromosome, getIdentifier, getRandom

Methods inherited from class net.sf.tostring0.AToString

toString, toString, toStringBrief, toStringId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Meiosis_Locus

public Meiosis_Locus(org.apache.commons.math.random.RandomGenerator random)

Public primary constructor for an implementer of Meiosis with given random number source.

Parameters:

random - a source of random numbers.

Method Detail

doMeiosis

public Genome doMeiosis(Genomic genomic,
                        Genes genes,
                        Chromosome chromosome)

This method does meiosis for a set of genes. Any genes not belonging to chromosome are ignored. Otherwise, each gene takes as its allele the allele determined invoking Meiosis.doMeiosis(Gene, int).

Parameters:

genomic -

genes - the genes to process

chromosome - the chromosome of interest (or null, if all are of interest).

Returns:

a haploid genome with loci corresponding to the chromosome (if given)

See Also:

Meiosis.doMeiosis(Genomic, com.rubecula.darwin.domain.helper.Genes, com.rubecula.darwin.domain.helper.Chromosome)