Uses of Interface
com.rubecula.darwin.domain.helper.Pharacter

Packages that use Pharacter

com.rubecula.darwin.domain.environment
com.rubecula.darwin.domain.helper	Darwin
com.rubecula.darwin.domain.world	Darwin
com.rubecula.darwin.examples.travelingsalesman	Traveling Salesman Example

Uses of Pharacter in com.rubecula.darwin.domain.environment

Classes in com.rubecula.darwin.domain.environment that implement Pharacter

class	Pharacter_ Base implementation of Pharacter (a Phenotypic Character).
class	Pharacter_Fisherian Lifespan: permanent.
class	Pharacter_Sex Lifespan: permanent singleton.

Fields in com.rubecula.darwin.domain.environment declared as Pharacter

protected Pharacter

Expresser_._character

Methods in com.rubecula.darwin.domain.environment that return Pharacter

Pharacter	Variant_.getCharacter()
Pharacter	Trait_.getCharacter()
Pharacter	Expresser_.getCharacter()
Pharacter	Phenome_.getCharacter(java.lang.String id) Get the character whose identifier matches id.

Methods in com.rubecula.darwin.domain.environment that return types with arguments of type Pharacter

java.util.Collection<Pharacter>

Phenome_.getCharacters()

Methods in com.rubecula.darwin.domain.environment with parameters of type Pharacter

int	Phenome_.addCharacter(Pharacter character)
protected static Trait	Expresser_.createTrait(Pharacter character, double value) TEST
protected static Trait	Expresser_.createTrait(Pharacter character, java.lang.String variant)
void	Phenotype_.doCensus(Pharacter character, FrequencyMap<Trait> traitFrequencies)
static Trait	TraitFactory.makeDiscrete(Pharacter character, java.lang.String variant) Factory method to create a discrete trait -- that is where the value is one of a finite set of variants, as opposed to the variable trait as in the case of TraitFactory.makeVariable(Pharacter, double).
static Trait	TraitFactory.makeVariable(Pharacter character, double value) Factory method to create a variable trait -- that is where the value is infinitely (or relatively infinitely) variable (as opposed to one of a discrete set) as in the case of TraitFactory.makeDiscrete(Pharacter, String).
void	Variant_.setCharacter(Pharacter character) Set the phenotypic character, normally via reflection/configuration.

Method parameters in com.rubecula.darwin.domain.environment with type arguments of type Pharacter

void	Phenome_.setCharacters(java.util.Collection<? extends Pharacter> characters) Set the phenotypic characters, usually by reflection/dependeny injection.

Constructors in com.rubecula.darwin.domain.environment with parameters of type Pharacter

Expresser_(Pharacter character)
protected constructor

Expresser_Direct(Pharacter character, java.util.Map<java.lang.String,java.lang.String> mapping)

Expresser_Function(Pharacter character, ExpresserFunction function)
TEST

Trait_(Pharacter character, java.lang.String variant)

Trait_Variable(Pharacter character, double value)

Uses of Pharacter in com.rubecula.darwin.domain.helper

Methods in com.rubecula.darwin.domain.helper that return Pharacter

Pharacter	Variant.getCharacter()
Pharacter	Trait.getCharacter()
Pharacter	Expresser.getCharacter()
Pharacter	Phenome.getCharacter(java.lang.String id)

Methods in com.rubecula.darwin.domain.helper that return types with arguments of type Pharacter

java.util.Collection<Pharacter>

Phenome.getCharacters()

Methods in com.rubecula.darwin.domain.helper with parameters of type Pharacter

int	Phenome.addCharacter(Pharacter character) Add a character to this phenome.
void	Phenotype.doCensus(Pharacter character, FrequencyMap<Trait> traitFrequencies)

Uses of Pharacter in com.rubecula.darwin.domain.world

Methods in com.rubecula.darwin.domain.world that return Pharacter

Pharacter

OrganismCensusContext.getCharacter()

Constructors in com.rubecula.darwin.domain.world with parameters of type Pharacter

Expresser_Mendelian(Pharacter character, java.lang.String domAllele, java.lang.String domVariant)

OrganismCensusContext(Pharacter character, FrequencyMap<Allele> alleleFrequencies, NumericFrequencyMap ageFrequencies, FrequencyMap<java.lang.String> sexFrequencies, FrequencyMap<Trait> traitFrequencies)

Uses of Pharacter in com.rubecula.darwin.examples.travelingsalesman

Constructors in com.rubecula.darwin.examples.travelingsalesman with parameters of type Pharacter

Expresser_TS(Pharacter character)