Uses of Interface
com.rubecula.darwin.domain.helper.Environment

Packages that use Environment

com.rubecula.darwin.domain.environment
com.rubecula.darwin.domain.fitness	Math
com.rubecula.darwin.domain.helper	Darwin
com.rubecula.darwin.domain.world	Darwin
com.rubecula.darwin.examples.pepperedmoth	Peppered Moth Example
com.rubecula.darwin.examples.travelingsalesman	Traveling Salesman Example

Uses of Environment in com.rubecula.darwin.domain.environment

Classes in com.rubecula.darwin.domain.environment that implement Environment

class	Environment_ Abstract class defining base methods which implement Environment interface.
class	Environment_Susceptible Abstract class for an Environment which is Susceptible to extended-phenotype-invoked changes.

Methods in com.rubecula.darwin.domain.environment that return Environment

Environment

EcoFactor_.getEnvironment()

Methods in com.rubecula.darwin.domain.environment with parameters of type Environment

void	EnvironmentListener_Writer.onEnvironmentChange(Environment env) print a message on the EnvironmentListener_Writer._writer.
void	EcoFactor_.setEnvironment(Environment environment)

Constructors in com.rubecula.darwin.domain.environment with parameters of type Environment

EnvironmentChangeEvent(Environment environment, java.lang.String factorKey, java.lang.Object factorValue)

Uses of Environment in com.rubecula.darwin.domain.fitness

Methods in com.rubecula.darwin.domain.fitness with parameters of type Environment

double	FitnessEngine_.calculateFitness(Phenotype phenotype, Environment environment) The base implementation of this method (which should normally be appropriate for all usage) simply goes through all possible pairings of trait/ecofactor (the traits belonging to the phenotype and the ecofactors belonging to the environment) and calculates the weighted product of all fitnesses.
void	FitnessEngine_.onEnvironmentChange(java.util.Collection<java.lang.String> characterKeys, Environment environment) The base implementation of this method (which should normally be appropriate for all usage) simply goes through all possible pairings of trait/ecofactor (from the given traits and the ecofactors belonging to the environment) and gets the appropriate setup.

Uses of Environment in com.rubecula.darwin.domain.helper

Methods in com.rubecula.darwin.domain.helper that return Environment

Environment	EcoFactor.getEnvironment()
Environment	Colony.getEnvironment() Method to get the environment in which this colony thrives.

Methods in com.rubecula.darwin.domain.helper with parameters of type Environment

void	FitnessCache.addFitness(TraitMap traits, FitnessEngine fitnessEngine, Environment environment, java.lang.Double fitness)
double	FitnessEngine.calculateFitness(Phenotype phenotype, Environment environment)
void	FitnessCache.flush(TraitMap traits, FitnessEngine engine, Environment environment) Flush the cache for the given combination of traits/engine.
java.lang.Double	FitnessCache.getFitness(TraitMap traits, FitnessEngine fitnessEngine, Environment environment)
void	Organism.normalizeGenome(Genome referenceGenome, java.util.Map<java.lang.String,Genome> cache, Environment environment)
void	FitnessEngine.onEnvironmentChange(java.util.Collection<java.lang.String> characterKeys, Environment environment) The base implementation of this method (which should normally be appropriate for all usage) simply goes through all possible pairings of trait/ecofactor (from the given traits and the ecofactors belonging to the environment) and gets the appropriate setup.
void	EnvironmentListener.onEnvironmentChange(Environment env) This method is called on a environment listener to notify it that the environment p has changed.
void	EcoFactor.setEnvironment(Environment environment)

Constructors in com.rubecula.darwin.domain.helper with parameters of type Environment

FitnessCacheKey(TraitMap traits, FitnessEngine engine, Environment environment)

Uses of Environment in com.rubecula.darwin.domain.world

Classes in com.rubecula.darwin.domain.world that implement Environment

class

Environment_Muirian Lifespan: permanent.

Fields in com.rubecula.darwin.domain.world declared as Environment

protected Environment

Colony_._environment The environment in which this population exists.

Methods in com.rubecula.darwin.domain.world that return Environment

Environment

Colony_.getEnvironment()

Methods in com.rubecula.darwin.domain.world with parameters of type Environment

protected abstract boolean	Population_Managed.isEnvironmentStable(Environment env)
protected abstract int	Population_Managed.makeDaughterColonies(Colony founderColony, Environment founderEnvironment)
void	Organism_.normalizeGenome(Genome referenceGenome, java.util.Map<java.lang.String,Genome> cache, Environment environment) TODO consider adding this to the Organism interface.
void	Organism_.onEnvironmentChange(Environment env) flush the fitness cache completely.
void	Colony_.onEnvironmentChange(Environment env)
protected abstract java.lang.String	Population_Managed.showEnvironment1(Environment environment)
protected abstract java.lang.String	Population_Managed.showEnvironment2(Environment environment)

Constructors in com.rubecula.darwin.domain.world with parameters of type Environment

Colony_(java.lang.String identifier, Environment environment, org.apache.commons.math.random.RandomGenerator random)

Colony_Mayrian(java.lang.String identifier, Environment environment, org.apache.commons.math.random.RandomGenerator random)

Uses of Environment in com.rubecula.darwin.examples.pepperedmoth

Classes in com.rubecula.darwin.examples.pepperedmoth that implement Environment

class

Environment_PepperedMoth This class provides an implementation of the Environment interface for the peppered moth example.

Methods in com.rubecula.darwin.examples.pepperedmoth with parameters of type Environment

void	EnvironmentListener_PepperedMoth.onEnvironmentChange(Environment env) TEST Method which reacts to changes in the environment and which updates the visualization model.

Uses of Environment in com.rubecula.darwin.examples.travelingsalesman

Classes in com.rubecula.darwin.examples.travelingsalesman that implement Environment

class

Environment_TS

Methods in com.rubecula.darwin.examples.travelingsalesman with parameters of type Environment

static Client[]	Phenotype_TS.getClients(Environment environment) TODO move this somewhere (it isn't related to Phenotype)
Client[]	Phenotype_TS.getClientsInOrder(Environment environment)
static java.lang.String[]	Phenotype_TS.getNames(Environment environment) TODO move this somewhere (it isn't related to Phenotype)
protected boolean	Population_TS.isEnvironmentStable(Environment environment)
protected int	Population_TS.makeDaughterColonies(Colony founderColony, Environment founderEnvironment) In this implementation, we get the client map from the founderEnvironment eco factor called EcoFactor_Clients.FACTOR_CLIENTS.
protected java.lang.String	Population_TS.showEnvironment1(Environment environment)
protected java.lang.String	Population_TS.showEnvironment2(Environment environment)

Constructors in com.rubecula.darwin.examples.travelingsalesman with parameters of type Environment

ClientMap(Environment environment)
Primary Constructor