Uses of Interface
com.rubecula.darwin.domain.helper.Basic

Packages that use Basic

com.rubecula.darwin.domain.genetics	Genetics
com.rubecula.darwin.domain.helper	Darwin
com.rubecula.darwin.examples.travelingsalesman	Traveling Salesman Example

Uses of Basic in com.rubecula.darwin.domain.genetics

Classes in com.rubecula.darwin.domain.genetics that implement Basic

class	Allele_ This abstract provides base operations for implementations of Allele, which are specific, competing genes which may appear at a Locus.
class	Allele_Binary Abstract type of allele which has two values, based on a boolean.
class	Allele_Dominance Lifespan: permanent.
class	Allele_Sex Unlike Allele_Dominance, which uses upper and lower case to denote dominance, the two different alleles of the Allele_Sex type are "Y" and "X" for male and female, respectively.
class	Gene_ This abstract class represents a particular gene at a locus of a genome.
class	Gene_Diploid Lifespan: transient.
class	Gene_Haploid Lifespan: transient.
class	Genome_ This abstract class provides base definitions for implementers of Genome, the genetic information contained in an Organism belonging to a Taxon.
class	Genome_Linear Lifespan: transient.
class	Genotype_ This abstract class provides base definitions for implementers of Genome, the genetic information contained in an Organism belonging to a Taxon.

Uses of Basic in com.rubecula.darwin.domain.helper

Subinterfaces of Basic in com.rubecula.darwin.domain.helper

interface	Allele Models the concept of an Allele, that is to say a specific instance of a Genes which "compete" for presence at a Locus
interface	Gene Defines the operations and properties of a Gene.
interface	Genes This interface represents the read-only aspects of (possibly a subset of) a Genome, although the Ploidy is not included here.
interface	Genome Defines the genetic information contained in an Organism belonging to a Taxon.
interface	Genotype A Genotype is a (diploid or haploid) set of genes which can be manipulated.

Methods in com.rubecula.darwin.domain.helper with parameters of type Basic

void	PhenotypeCache.addPhenotype(Basic genes, net.sf.tostring0.Identifiable identifiable, Phenotype phenotype)
void	PhenotypeCache.flush(Basic genes, net.sf.tostring0.Identifiable identifiable)
Phenotype	PhenotypeCache.getPhenotype(Basic genes, net.sf.tostring0.Identifiable identifiable)

Constructors in com.rubecula.darwin.domain.helper with parameters of type Basic

PhenotypeCacheKey(Basic genes, net.sf.tostring0.Identifiable identifiable)

Uses of Basic in com.rubecula.darwin.examples.travelingsalesman

Classes in com.rubecula.darwin.examples.travelingsalesman that implement Basic

class

Allele_Number This class is at the heart of the solution to the traveling salesman problem.