Uses of Class
com.rubecula.darwin.domain.fitness.FitnessException

Packages that use FitnessException

com.rubecula.darwin.domain.fitness	Math
com.rubecula.darwin.domain.helper	Darwin
com.rubecula.darwin.domain.world	Darwin
com.rubecula.darwin.examples.pepperedmoth	Peppered Moth Example
com.rubecula.darwin.examples.travelingsalesman	Traveling Salesman Example

Uses of FitnessException in com.rubecula.darwin.domain.fitness

Methods in com.rubecula.darwin.domain.fitness that throw FitnessException

protected double	Fitness_.calculateFitness(double t, double f, java.lang.String keyT, java.lang.String keyF) Calculate and return the value of the probability density function corresponding to the variate value t * sT of a continuous distribution with mean: f * sF and standard deviation: the value of Fitness_.bandwidth(String).
double	FitnessEngine_.calculateFitness(Phenotype phenotype, Environment environment) The base implementation of this method (which should normally be appropriate for all usage) simply goes through all possible pairings of trait/ecofactor (the traits belonging to the phenotype and the ecofactors belonging to the environment) and calculates the weighted product of all fitnesses.
double	FitnessFunction_.getFitness(double value, double target, double factor) Get the fitness based on the value (usually from one of the traits of a phenotype), the target (usually a value from an eco factor in the environment), and the shape factor (usually determined by the application).
double	Fitness_Hamiltonian.getFitness(Trait trait, EcoFactor factor)

Uses of FitnessException in com.rubecula.darwin.domain.helper

Methods in com.rubecula.darwin.domain.helper that throw FitnessException

double	FitnessEngine.calculateFitness(Phenotype phenotype, Environment environment)
double	FitnessFunction.getFitness(double value, double target, double factor)
java.lang.Number	Organism.getFitness(FitnessEngine fitnessEngine)
double	Fitness.getFitness(Trait trait, EcoFactor factor)
double	Colony.grantPardons(double fittestOriginal, int pardonsPerColony)
void	Colony.markDeadOrganisms(Viability viability)
boolean	Organism.setViability(Viability viability)
void	Colony.thin(int thinFactor) Thin (decimate) the organisms of this colony by a factor of thinFactor.

Uses of FitnessException in com.rubecula.darwin.domain.world

Methods in com.rubecula.darwin.domain.world that throw FitnessException

java.lang.Number	Organism_.getFitness(FitnessEngine fitnessEngine)
double	Colony_.grantPardons(double fittestOriginal, int pardonsPerColony)
void	Colony_.markDeadOrganisms(Viability viability)
protected void	Colony_.neonatalCare() Register all births with the Registry (if any); Mark dead organisms (with true parameter).
boolean	Viability.resetViability(Organism organism)
boolean	Organism_.setViability(Viability viability)
void	Colony_.thin(int thinFactor)
protected void	Population_Managed.thinColonies(int thinFactor) Reduce the population of each colony of this population by the thinFactor.

Uses of FitnessException in com.rubecula.darwin.examples.pepperedmoth

Methods in com.rubecula.darwin.examples.pepperedmoth that throw FitnessException

double

WcSdFitness.getFitness(Trait trait, EcoFactor factor)

Uses of FitnessException in com.rubecula.darwin.examples.travelingsalesman

Methods in com.rubecula.darwin.examples.travelingsalesman that throw FitnessException

protected double	RouteFitness.calculateFitness(double travelTime, double radius, java.lang.String traitId, java.lang.String factorId) Calculate fitness according to the pseudo-Poisson distribution function.
double	RouteFitness.getFitness(Trait trait, EcoFactor factor) Calculate the fitness for the trait and the factor.