com.rubecula.darwin.domain.genetics
Class Genomic_Diploid

java.lang.Object
  net.sf.tostring0.AToString
      com.rubecula.darwin.domain.genetics.Genomic_
          com.rubecula.darwin.domain.genetics.Genomic_Diploid

All Implemented Interfaces:

Genomic, Ploidy, Replicator, Countable, net.sf.tostring0.Identifiable, net.sf.tostring0.IToString

Direct Known Subclasses:

Genomic_Sexual

public class Genomic_Diploid
extends Genomic_

Lifespan: permanent. Concrete implementation of Genomic representing the possible genetic information contained in a Taxon. A Genomic_Diploid contains exactly one chromosome which is sex-linked.
Note that there is a sub-type, Genomic_Sexual, which should normally be used rather than this type.

Version:

$Revision: 1.4 $

Author:

Robin Hillyard

Field Summary

Fields inherited from class com.rubecula.darwin.domain.genetics.Genomic_

_chromosomes, expresserCommon, expressers, LOG

Fields inherited from interface com.rubecula.darwin.domain.helper.Ploidy

DIPLOID, HAPLOID

Fields inherited from interface net.sf.tostring0.IToString

ANGBR_OPEN, ANGBRA_CLSE, BRA_CLSE, BRA_OPEN, BRCE_OPEN, BRCS_CLSE, COLON, LIST_SEPARATOR, MAX_ELEMENTS_DEFAULT, S_MT, S_PERCENT, SEPARATOR, SPACE

Constructor Summary

Genomic_Diploid(java.lang.String identifier, Meiosis meiosis)
TEST Constructor for a new Genomic_Diploid instance using the given meiosis implementation and no mutation.

Genomic_Diploid(java.lang.String identifier, Meiosis meiosis, Mutator mutator)
Constructor for a new Genomic_Diploid instance using the given meiosis implementation and the given mutator implementation.

Method Summary

Methods inherited from class com.rubecula.darwin.domain.genetics.Genomic_

addChromosome, addChromosome, clearChromosomes, createGamete, equals, express, express, getAlphabet, getChromosome, getChromosomes, getCount, getExpresser, getExpressers, getIdentifier, getLocus, getLocusCount, getMeiosis, getMutator, getPloidy, hashCode, mutate, normalize, putExpresser, setChromosomes, setExpresser, setExpressers, simplify

Methods inherited from class net.sf.tostring0.AToString

toString, toString, toStringBrief, toStringId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

Genomic_Diploid

public Genomic_Diploid(java.lang.String identifier,
                       Meiosis meiosis)

TEST Constructor for a new Genomic_Diploid instance using the given meiosis implementation and no mutation.

Parameters:

identifier - the identifier for this Genomic.

meiosis - an implementer of Meiosis.

Genomic_Diploid

public Genomic_Diploid(java.lang.String identifier,
                       Meiosis meiosis,
                       Mutator mutator)

Constructor for a new Genomic_Diploid instance using the given meiosis implementation and the given mutator implementation.

Parameters:

identifier -

meiosis -

mutator -