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| Packages that use com.rubecula.darwin.core | |
|---|---|
| com.rubecula.darwin.core | Darwin |
| com.rubecula.darwin.examples.pepperedmoth | Peppered Moth Example |
| com.rubecula.darwin.examples.travelingsalesman | Traveling Salesman Example |
| com.rubecula.darwin.visualization | Display Package |
| Classes in com.rubecula.darwin.core used by com.rubecula.darwin.core | |
|---|---|
| Allele
Models the concept of an Allele, that is to say a specific instance of one of a set of Genes which "compete" for presence at a Locus |
|
| Allele_Abstract
This abstract provides base operations for implementations of Allele,
which are specific genes which may appear at a
Locus. |
|
| Asexual
Defines operations on asexual organisms. |
|
| Attribute
Defines the methods supported by Attribute objects. |
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| Attribute_Abstract
Abstract class representing a named attribute, and is the base class for Trait_Abstract, Allele_Abstract and EcoFactor_Abstract. |
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| Census
This application interface is used to define how an individual object should be processed for a census. |
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| Census_Abstract
Base implementation the Census interface. |
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| CensusibleCollection
Defines how to census an object which is a collection of parts. |
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| Darwinian
Defines the methods supported by an evolutionary computation (Darwinian) system. |
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| Darwinian_Abstract
Abstract class implementing Darwinian interface. |
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| EcoFactor
Defines the methods supported by the EcoFactor interface. |
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| EcoFactor_Abstract
Abstract class providing base functionality for implementers of EcoFactor. |
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| Environment
Defines the concept of an Environment, modeled as a map of EcoFactor objects. |
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| Environment_Abstract
Abstract class defining base methods which implement Environment interface. |
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| EnvironmentListener
Defines the mechanism for notifying interested objects about changes in an environment. |
|
| Expression
Defines the methods to be implemented by an expresser of genes, i.e. |
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| Expression_Abstract
Abstract class defining base implementation for Expression (of Genes). |
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| Factory
Defines the methods which will instantiate new objects for an evolutionary computation system. |
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| Factory_Abstract
Abstract Factory. |
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| Fecundity
Defines methods to determine how fecund will be a particular mating in a population, i.e. |
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| Fecundity_Abstract
Base implementation of the Fecundity interface. |
|
| Fit
Defines the aspect of an object which measures its fitness with respect to an environment. |
|
| Fitness
Defines fitness functions for Darwinian (Evolutionary Computation) Systems. |
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| Fitness_Abstract
Defines the base methods and fields for an implementation of Fitness interface. |
|
| Gene
Defines the operations and properties of a Gene. |
|
| Gene_Abstract
This abstract class represents a particular gene at a locus of a genome. |
|
| Generatable
Ddefines the mechanism by which the next generation of, for example, a population is created. |
|
| GenerationListener
Defines a callback method for invocation whenever the GenerationTimerTask runs. |
|
| GenerationTimerTask
Timer Task which, when in "running" state, will invoke the next generation of a Generatable object (provided by the constructor). |
|
| Genome
Defines the genetic information contained in a Darwinian system. |
|
| Genome_Abstract
Abstract class implementing base methods for the Genome interface. |
|
| Genotype
Defines the genetic information contained in an Organism belonging to a Darwinian system. |
|
| Genotype_Abstract
This abstract class provides base definitions for implementers of Genotype,
the genetic information contained in an
Organism belonging to a Darwinian system. |
|
| Locus
Defines a Locus at which one of several Alleles may appear. |
|
| Locus_Abstract
Abstract class defining the base methods and fields for an implementer of Locus. |
|
| MateChoice
Defines methods to determine how mates are chosen. |
|
| MateChoice_Abstract
Abstract class defining the base methods of MateChoice. |
|
| Mating
Defines the mating of a pair of organisms, one male, one female. |
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| Mating_Abstract
Abstract class to define base methods for implementers of Mating. |
|
| Meiosis
Defines how alleles are chosen during Meiosis. |
|
| Meiosis_Abstract
Abstract class which defines the base operations for an implementation of Meiosis. |
|
| Mortality
Defines how mortality is calculated for individual objects (organisms) in Darwinian Systems. |
|
| Mortality_Abstract
Abstract class which defines the base methods and fields needed to implement the Mortality interface. |
|
| Mutator
Defines the methods for gene and genotype mutators. |
|
| Mutator_Abstract
Abstract class to define the base methods and fields for instances of Mutator interface. |
|
| Organism
Defines methods of an individual organism within a Darwinian System. |
|
| Organism_Abstract
Abstract class defining the base methods and fields of an implementation of Organism interface. |
|
| Organism_Sexual
This concrete class represents an individual organism within a Darwinian System. |
|
| Phenome
Defines the methods for implementations of the Phenome interface. |
|
| Phenome_Abstract
Abstract class defining base methods and fields for implementations of Phenome interface. |
|
| Phenotype
Defines the methods supported by instances of Phenotype interface. |
|
| Phenotype_Abstract
Abstract class to define the base methods and fields for an implementation of Phenotype. |
|
| Population
Defines the properties (methods) which characterize a population in an Evolutionary Computation. |
|
| Population_Abstract
Abstract class defining the base methods and fields for an instance of the Population interface. |
|
| PopulationListener
Defines the mechanism for notifying interested objects about changes in a population. |
|
| Sexual
Defines the one method which must be supported by sex-based organisms, viz. |
|
| Trait
Defines the methods support by instances of the Trait interface. |
|
| Trait_Abstract
This abstract class defines the base methods and fields for an implementation of Trait. |
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| TraitMap
Defines the operations on a collection of Trait instances. |
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| TraitMap_Abstract
Abstract class to define base methods and fields for a String-keyed map of Trait objects. |
|
| TraitValue
Defines how to get a numerical value for a trait. |
|
| Classes in com.rubecula.darwin.core used by com.rubecula.darwin.examples.pepperedmoth | |
|---|---|
| Allele
Models the concept of an Allele, that is to say a specific instance of one of a set of Genes which "compete" for presence at a Locus |
|
| Allele_Abstract
This abstract provides base operations for implementations of Allele,
which are specific genes which may appear at a
Locus. |
|
| Attribute
Defines the methods supported by Attribute objects. |
|
| Attribute_Abstract
Abstract class representing a named attribute, and is the base class for Trait_Abstract, Allele_Abstract and EcoFactor_Abstract. |
|
| Census
This application interface is used to define how an individual object should be processed for a census. |
|
| Census_Abstract
Base implementation the Census interface. |
|
| Darwinian
Defines the methods supported by an evolutionary computation (Darwinian) system. |
|
| EcoFactor
Defines the methods supported by the EcoFactor interface. |
|
| Environment
Defines the concept of an Environment, modeled as a map of EcoFactor objects. |
|
| Environment_Abstract
Abstract class defining base methods which implement Environment interface. |
|
| EnvironmentListener
Defines the mechanism for notifying interested objects about changes in an environment. |
|
| Expression
Defines the methods to be implemented by an expresser of genes, i.e. |
|
| Expression_Abstract
Abstract class defining base implementation for Expression (of Genes). |
|
| Factory
Defines the methods which will instantiate new objects for an evolutionary computation system. |
|
| Factory_Abstract
Abstract Factory. |
|
| Factory_Default
Default implementation of Factory. |
|
| Fitness
Defines fitness functions for Darwinian (Evolutionary Computation) Systems. |
|
| Gene
Defines the operations and properties of a Gene. |
|
| Generatable
Ddefines the mechanism by which the next generation of, for example, a population is created. |
|
| GenerationListener
Defines a callback method for invocation whenever the GenerationTimerTask runs. |
|
| Locus
Defines a Locus at which one of several Alleles may appear. |
|
| Locus_Abstract
Abstract class defining the base methods and fields for an implementer of Locus. |
|
| MateChoice
Defines methods to determine how mates are chosen. |
|
| MateChoice_Abstract
Abstract class defining the base methods of MateChoice. |
|
| Mutator
Defines the methods for gene and genotype mutators. |
|
| Mutator_Abstract
Abstract class to define the base methods and fields for instances of Mutator interface. |
|
| Organism
Defines methods of an individual organism within a Darwinian System. |
|
| Population
Defines the properties (methods) which characterize a population in an Evolutionary Computation. |
|
| PopulationListener
Defines the mechanism for notifying interested objects about changes in a population. |
|
| Trait
Defines the methods support by instances of the Trait interface. |
|
| Trait_Abstract
This abstract class defines the base methods and fields for an implementation of Trait. |
|
| TraitValue
Defines how to get a numerical value for a trait. |
|
| Classes in com.rubecula.darwin.core used by com.rubecula.darwin.examples.travelingsalesman | |
|---|---|
| Allele
Models the concept of an Allele, that is to say a specific instance of one of a set of Genes which "compete" for presence at a Locus |
|
| Allele_Abstract
This abstract provides base operations for implementations of Allele,
which are specific genes which may appear at a
Locus. |
|
| Attribute
Defines the methods supported by Attribute objects. |
|
| Attribute_Abstract
Abstract class representing a named attribute, and is the base class for Trait_Abstract, Allele_Abstract and EcoFactor_Abstract. |
|
| Census
This application interface is used to define how an individual object should be processed for a census. |
|
| Census_Abstract
Base implementation the Census interface. |
|
| CensusibleCollection
Defines how to census an object which is a collection of parts. |
|
| Darwinian
Defines the methods supported by an evolutionary computation (Darwinian) system. |
|
| EcoFactor
Defines the methods supported by the EcoFactor interface. |
|
| EcoFactor_Abstract
Abstract class providing base functionality for implementers of EcoFactor. |
|
| Environment
Defines the concept of an Environment, modeled as a map of EcoFactor objects. |
|
| Expression
Defines the methods to be implemented by an expresser of genes, i.e. |
|
| Expression_Abstract
Abstract class defining base implementation for Expression (of Genes). |
|
| Factory
Defines the methods which will instantiate new objects for an evolutionary computation system. |
|
| Factory_Abstract
Abstract Factory. |
|
| Factory_Default
Default implementation of Factory. |
|
| Fit
Defines the aspect of an object which measures its fitness with respect to an environment. |
|
| Gene
Defines the operations and properties of a Gene. |
|
| Gene_Abstract
This abstract class represents a particular gene at a locus of a genome. |
|
| Gene_Haploid
Concrete class to model a haploid gene (locus). |
|
| Generatable
Ddefines the mechanism by which the next generation of, for example, a population is created. |
|
| Genotype
Defines the genetic information contained in an Organism belonging to a Darwinian system. |
|
| Genotype_Abstract
This abstract class provides base definitions for implementers of Genotype,
the genetic information contained in an
Organism belonging to a Darwinian system. |
|
| Locus
Defines a Locus at which one of several Alleles may appear. |
|
| Locus_Abstract
Abstract class defining the base methods and fields for an implementer of Locus. |
|
| Mortality
Defines how mortality is calculated for individual objects (organisms) in Darwinian Systems. |
|
| Mortality_Abstract
Abstract class which defines the base methods and fields needed to implement the Mortality interface. |
|
| Mutator
Defines the methods for gene and genotype mutators. |
|
| Mutator_Abstract
Abstract class to define the base methods and fields for instances of Mutator interface. |
|
| Phenome
Defines the methods for implementations of the Phenome interface. |
|
| Phenotype
Defines the methods supported by instances of Phenotype interface. |
|
| Phenotype_Abstract
Abstract class to define the base methods and fields for an implementation of Phenotype. |
|
| Population
Defines the properties (methods) which characterize a population in an Evolutionary Computation. |
|
| Population_Abstract
Abstract class defining the base methods and fields for an instance of the Population interface. |
|
| PopulationListener
Defines the mechanism for notifying interested objects about changes in a population. |
|
| Trait
Defines the methods support by instances of the Trait interface. |
|
| Trait_Abstract
This abstract class defines the base methods and fields for an implementation of Trait. |
|
| TraitMap
Defines the operations on a collection of Trait instances. |
|
| TraitMap_Abstract
Abstract class to define base methods and fields for a String-keyed map of Trait objects. |
|
| Classes in com.rubecula.darwin.core used by com.rubecula.darwin.visualization | |
|---|---|
| DarwinProperties
A property resource bundle specifically useful to a Darwinian system. |
|
| Organism
Defines methods of an individual organism within a Darwinian System. |
|
| Population
Defines the properties (methods) which characterize a population in an Evolutionary Computation. |
|
| PopulationListener
Defines the mechanism for notifying interested objects about changes in a population. |
|
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