com.rubecula.darwin.core
Class Factory_Default

java.lang.Object
  com.rubecula.darwin.core.Factory_Abstract
      com.rubecula.darwin.core.Factory_Default

All Implemented Interfaces:

Factory

Direct Known Subclasses:

Factory_PepperedMoth, Factory_TS

public class Factory_Default
extends Factory_Abstract

Default implementation of Factory. For the convenience of applications, this class can be extended. TODO Consider making this class final (because it's a Default class). However, currently it has extenders.

Author:

Robin

Field Summary

protected static String	CLASS
protected static String	NEED_PROPS
protected static String	NO_PROPS

Fields inherited from class com.rubecula.darwin.core.Factory_Abstract

P_ALLELE0, P_ALLELE1, P_SEX

Constructor Summary

Factory_Default()

Method Summary

Allele	makeAllele(Object value, Map<String,Object> properties) Factory method to instantiate a new Allele of the appropriate class, with an auto-generated key.
Allele	makeAllele(Object key, Object value, Map<String,Object> properties) Factory method to instantiate a new Allele of the appropriate class.
Gene	makeGene(int ode, Map<String,Object> properties) Factory method to instantiate a new Gene of the appropriate class.
Genotype	makeGenotype(int ode, Map<String,Object> properties) Factory method to instantiate a new genotype of the appropriate class.
Organism	makeOrganism(String identifier, Population population, Genotype genotype, Map<String,Object> properties) Factory method to instantiate a new organism of the appropriate class.
Phenotype	makePhenotype(Map<String,Object> properties) Factory method to instantiate a new phenotype of the appropriate class.
Trait	makeTrait(String identifier, Object value, Map<String,Object> properties) Factory method to instantiate a new Trait of the appropriate class.

Methods inherited from class com.rubecula.darwin.core.Factory_Abstract

makeAllele, makeAllele, makeDiploidAlleleMap, makeGene, makeGenotype, makeHaploidAlleleMap, makeOrganism, makeOrganism, makeOrganism, makePhenotype, makeSexMap, makeTrait, makeTrait, makeTrait

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NO_PROPS

protected static final String NO_PROPS

See Also:

Constant Field Values

NEED_PROPS

protected static final String NEED_PROPS

See Also:

Constant Field Values

CLASS

protected static final String CLASS

See Also:

Constant Field Values

Constructor Detail

Factory_Default

public Factory_Default()

Method Detail

makeAllele

public Allele makeAllele(Object value,
                         Map<String,Object> properties)

Description copied from interface: Factory

Factory method to instantiate a new Allele of the appropriate class, with an auto-generated key.

Parameters:

value - the value of the new allele.

properties - a map which specifies any additional properties required at instantation time.

Returns:

a newly constructed instance of Allele.

makeAllele

public Allele makeAllele(Object key,
                         Object value,
                         Map<String,Object> properties)

Description copied from interface: Factory

Factory method to instantiate a new Allele of the appropriate class.

Parameters:

key - the key of the new allele.

value - the value of the new allele.

properties - a map which specifies any additional properties required at instantation time.

Returns:

a newly constructed instance of Allele.

makeGene

public Gene makeGene(int ode,
                     Map<String,Object> properties)

Description copied from interface: Factory

Factory method to instantiate a new Gene of the appropriate class.

Parameters:

ode - the number of alleles to be found at a particular locus (1 if haploid, 2 if diploid).

properties - a map which specifies any additional properties required at instantation time.

Returns:

a newly constructed instance of Gene.

makeGenotype

public Genotype makeGenotype(int ode,
                             Map<String,Object> properties)

Description copied from interface: Factory

Factory method to instantiate a new genotype of the appropriate class.

Parameters:

ode - the number of alleles to be found at a particular locus (1 if haploid, 2 if diploid).

properties - a map which specifies any additional properties required at instantation time.

Returns:

a newly constructed instance of Genotype.

makeOrganism

public Organism makeOrganism(String identifier,
                             Population population,
                             Genotype genotype,
                             Map<String,Object> properties)

Description copied from interface: Factory

Factory method to instantiate a new organism of the appropriate class.

Parameters:

identifier - the identifier for the new organism.

population - the population into which the new organism will be "born".

genotype - the genotype which defines the new organism.

properties - a map which specifies any additional properties required at instantation time.

Returns:

a newly constructed instance of Organism.

makePhenotype

public Phenotype makePhenotype(Map<String,Object> properties)

Description copied from interface: Factory

Factory method to instantiate a new phenotype of the appropriate class.

Parameters:

properties - a map which specifies any additional properties required at instantation time.

Returns:

a newly constructed instance of Phenotype.

makeTrait

public Trait makeTrait(String identifier,
                       Object value,
                       Map<String,Object> properties)

Description copied from interface: Factory

Factory method to instantiate a new Trait of the appropriate class.

Parameters:

identifier - the identifier of the new trait.

value - the initial value of the new trait.

properties - a map which specifies any additional properties required at instantation time.

Returns:

a newly constructed instance of Trait.